View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_21 (Length: 310)
Name: NF8907_low_21
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 45043809 - 45044098
Alignment:
| Q |
1 |
caaagaattacttcaaattcaggcttgaaattgtgcataagaaaaggaaaatttaccaatcgtgctttagatatgatcaagaagataaaagagtggtttt |
100 |
Q |
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| T |
45043809 |
caaagaagtacttcaactttaggcttgaaattgtgcataagaaaaggaaaatttaccaatcgtgcattagatatgatcaagaagataaaagagtggtttt |
45043908 |
T |
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| Q |
101 |
aatcagggtaaagtattaactaaccttcatattgatatggaagcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaat |
200 |
Q |
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| T |
45043909 |
aatcagggtaaagtattaactaaccttcatattgatatggaagcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaat |
45044008 |
T |
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| Q |
201 |
gaagaactagggggattgaagtggtaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgagactta |
290 |
Q |
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| T |
45044009 |
gaagaactagggggattgaagtggtaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgagactta |
45044098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 107 - 283
Target Start/End: Original strand, 46175992 - 46176168
Alignment:
| Q |
107 |
ggtaaagtattaactaaccttcatattgatatggaagcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaatgaagaa |
206 |
Q |
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| T |
46175992 |
ggtaaagtattaactaaccttcatattgttatggaagcttatgagctaaggtagaagaaactcttgatgcaaattgtaatagaagggaaagaatgaagaa |
46176091 |
T |
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| Q |
207 |
ctagggggattgaagtggtaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttg |
283 |
Q |
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| T |
46176092 |
ctagggggattgaagtggcaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttg |
46176168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 45036457 - 45036607
Alignment:
| Q |
47 |
gaaaatttaccaatcgtgctttagatatgatcaagaagataaaagagtggttttaatcagggtaaagtattaactaaccttcatattgatatggaagctt |
146 |
Q |
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| T |
45036457 |
gaaaattcaccaatcatactttagctatgatgaaggagataaaa-agtggttttaatgaaggtaaagtattaactaaccttcatattgttatggaagcta |
45036555 |
T |
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| Q |
147 |
ataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaa |
199 |
Q |
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| T |
45036556 |
ctgagctgaggtagaag-aactcttgatgcaaattgtaatagaagggaaagaa |
45036607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46175914 - 46175974
Alignment:
| Q |
1 |
caaagaattacttcaaattcaggcttgaaattgtgcataagaaaaggaaaatttaccaatc |
61 |
Q |
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| T |
46175914 |
caaagaagtacttcaaattcaggcttgaaattgtgcataagaaaaggaaaatttaccaatc |
46175974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 45036624 - 45036667
Alignment:
| Q |
241 |
ttttcaatttgaagttaagttatgaagtgaagatgataatttga |
284 |
Q |
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| T |
45036624 |
ttttgaatttgaaattaagttatgaaatgaagatgataatttga |
45036667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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