View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_23 (Length: 302)
Name: NF8907_low_23
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 28451811 - 28451569
Alignment:
| Q |
16 |
gacatcatggtttttgatgtcgccgcgtttgtaagtaactgcgattcaggctgagctgcgacatcaacagcatttgattcgcaatatcaaaaaacgtaac |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28451811 |
gacatcatggcttttgatgtcgccgcgtttgtaagtaactgcgattcaggctgagctgcgacatcaacagcatttgattcgcaatataaaaaaacgtaac |
28451712 |
T |
|
| Q |
116 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccctacttacttgctagcaggagcagtgctatttccattattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451711 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccctacttacttgctagcaggagcagtgctatttccattattt |
28451612 |
T |
|
| Q |
216 |
gcagaaccattaagacctggtttgctttcaccaacaccattag |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451611 |
gcagaaccattaagacctggtttgctttcaccaacaccattag |
28451569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 19208193 - 19208420
Alignment:
| Q |
17 |
acatcatggtttttgatgtcgccgcgtttgtaagtaactgcgatt-caggctgagctgcgacatcaacagcatttgattcgcaatatcaaaaaacgtaac |
115 |
Q |
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||||||||| ||||||| |||||||||||||||||||| |||||| ||||||| |||||||| ||||||| ||| | ||||||||| |||||| |
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| T |
19208193 |
acatcatggcttttgatatcgccgcgtttgtaagtaacagcgatttcaggctg--------catcaacatcatttgactcgtagtatcaaaaatcgtaac |
19208284 |
T |
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| Q |
116 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccctacttacttgctagcaggagcagtgctatttccattattt |
215 |
Q |
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| T |
19208285 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcaca-------ccaccctacttacttgctagcaggagcagtgctatttccattattt |
19208377 |
T |
|
| Q |
216 |
gcagaaccattaagacctggtttgctttcaccaacaccattag |
258 |
Q |
| |
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||||||||| |||||| ||||||||| |||| |||||||||| |
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| T |
19208378 |
gcagaaccaataagacttggtttgctatcactgacaccattag |
19208420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 23738922 - 23738696
Alignment:
| Q |
17 |
acatcatggtttttgatgtcgccgcgtttgtaagtaactgcgatt-caggctgagctgcgacatcaacagcatttgattcgcaatatcaaaaaacgtaac |
115 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| || |||||| ||||||| |||||||| ||||||| ||| | ||||||||| |||||| |
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| T |
23738922 |
acatcatggcttttgatatcgccgcgtttgtaagttacagcgatttcaggctg--------catcaacatcatttgactcgtagtatcaaaaa-cgtaac |
23738832 |
T |
|
| Q |
116 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccctacttacttgctagcaggagcagtgctatttccattattt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23738831 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacac-------caccctacttacttgctagcaggagtagtgctatttccattattt |
23738739 |
T |
|
| Q |
216 |
gcagaaccattaagacctggtttgctttcaccaacaccattag |
258 |
Q |
| |
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||||||||| ||||| ||||||||| |||| |||||||||| |
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| T |
23738738 |
gcagaaccaataagagttggtttgctatcactgacaccattag |
23738696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 43300694 - 43300642
Alignment:
| Q |
16 |
gacatcatggtttttgatgtcgccgcgtttgtaagtaactgcgattcaggctg |
68 |
Q |
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|
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
43300694 |
gacatcatggcttttgatatcgccgcgtttgtaagtaactgcgattcatgctg |
43300642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 41958191 - 41958244
Alignment:
| Q |
16 |
gacatcatggtttttgatgtcgccgcgttt-gtaagtaactgcgattcaggctg |
68 |
Q |
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|
|||||||||| ||||||| |||||| |||| |||||||||||||||||| |||| |
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|
| T |
41958191 |
gacatcatggcttttgatatcgccgtgttttgtaagtaactgcgattcatgctg |
41958244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 43916825 - 43916605
Alignment:
| Q |
16 |
gacatcatggtttttgatgtcgccgcgtttgtaagtaactgcgattcaggctgagctgcgacatcaacagcatttgattcgcaatatcaaaaaacgtaac |
115 |
Q |
| |
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|||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| ||||||||| |||||| || ||| ||||||||| ||||| |
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| T |
43916825 |
gacatcatggcttttgatatcgccgcatttgtaagtaactacgattcaggct--------acatcaacaacatttgtttagcagtatcaaaaattgtaac |
43916734 |
T |
|
| Q |
116 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccctacttacttgctagcaggagcagtgctatttccattattt |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
43916733 |
atgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacac-------caccctacttacttgctagcaggagcggtgctattttcattattt |
43916641 |
T |
|
| Q |
216 |
gcagaaccattaagacctggtttgctttcaccaaca |
251 |
Q |
| |
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|||||| || | |||| |||||||||||||| |||| |
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| T |
43916640 |
gcagaaacaatgagacttggtttgctttcactaaca |
43916605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 44660829 - 44660777
Alignment:
| Q |
16 |
gacatcatggtttttgatgtcgccgcgtttgtaagtaactgcgattcaggctg |
68 |
Q |
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|
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
44660829 |
gacatcatggcttttgatatcgccgcgtttgtaagtaactgcgattcatgctg |
44660777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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