View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_26 (Length: 292)
Name: NF8907_low_26
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 45722354 - 45722088
Alignment:
| Q |
18 |
gtattaatctctttgtcttgctaaactgcaaagttcagtttatatgttcacggggacgagccacatttctttctaatacacagggaacggataactatga |
117 |
Q |
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| T |
45722354 |
gtattaatctctttgtcttgctaaactgcaaagttcagtttatatgttcacggggacgagccacatttctttctaatacacagggaacggataactatga |
45722255 |
T |
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| Q |
118 |
ataaaagagcatctccaatgctaaagattaagaccggttcataatttcattttttgtgggtccaacataatgttctttgttttacattaaattcggtccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45722254 |
ataaaagagcatctccaatgctaaagattaagaccggttcataatttcattttttgtgggtccaacataatgttctttgttttacattaaattcggtccc |
45722155 |
T |
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| Q |
218 |
atatgctattatttcttctcccacatctctactttctcacatctccactttttaccctctctctgct |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45722154 |
atatactattatttcttctcccacatctctactttctcacatctccactttttaccctctctatgct |
45722088 |
T |
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