View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_29 (Length: 266)
Name: NF8907_low_29
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_29 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 28452043 - 28451789
Alignment:
| Q |
12 |
aacctgtgccctgcaccacaagattcatcgatcatcattccgagatcatttccattgttaagccaagccaagcttttaaaataagttcgcaaccgcggtc |
111 |
Q |
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| T |
28452043 |
aacctgtgccctgcaccacaagattcatcgatcattattccgagatcatttccattgttaagccaagccaagcttttaaaataagtttgcaaccgcggcc |
28451944 |
T |
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| Q |
112 |
tgggccgcgacatcatgatttttgatgatggcatgaccgtgatacaatcacgattcaagctgcatttgactatgactctcaaaaatcacaaaaattgaaa |
211 |
Q |
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| T |
28451943 |
tgggccgcgacatcatgattttttatggtggcatgaccgtgatacaatcacaattcaagctgcatttgactatgactctcaaaaatcacaaaaattgaaa |
28451844 |
T |
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| Q |
212 |
cgcggccattatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
28451843 |
cgcggccattatttgacagcaatctgagctgcgacatcatggcttttgatgtcgc |
28451789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 43300737 - 43300672
Alignment:
| Q |
201 |
aaaaattgaaacgcggccattatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
43300737 |
aaaaattgaaacgcagccattatttgaccgcaatgtgagttgcgacatcatggcttttgatatcgc |
43300672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 41958148 - 41958213
Alignment:
| Q |
201 |
aaaaattgaaacgcggccattatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
41958148 |
aaaaattgaaaagcagccattatttgaccgcaatgtgagttgcgacatcatggcttttgatatcgc |
41958213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 19208167 - 19208214
Alignment:
| Q |
219 |
attatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
19208167 |
attatttgaccgcaatctgagctgcaacatcatggcttttgatatcgc |
19208214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 23738948 - 23738901
Alignment:
| Q |
219 |
attatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
23738948 |
attatttgaccgcaatctgagctgcaacatcatggcttttgatatcgc |
23738901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 44660872 - 44660807
Alignment:
| Q |
201 |
aaaaattgaaacgcggccattatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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| T |
44660872 |
aaaaattgaaacgcagccattatttgaccgcaatgtgagttgcgacatcatggcttttgatatcgc |
44660807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 43916868 - 43916803
Alignment:
| Q |
201 |
aaaaattgaaacgcggccattatttgacagcaatctgagctgcgacatcatggtttttgatgtcgc |
266 |
Q |
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|||||||||||||| |||||||||| || ||||| |||||| ||||||||||| ||||||| |||| |
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| T |
43916868 |
aaaaattgaaacgcagccattatttaaccgcaatatgagctacgacatcatggcttttgatatcgc |
43916803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 22919589 - 22919621
Alignment:
| Q |
232 |
aatctgagctgcgacatcatggtttttgatgtc |
264 |
Q |
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| T |
22919589 |
aatctgagctgctacatcatggtttttgatgtc |
22919621 |
T |
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