View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8907_low_3 (Length: 776)
Name: NF8907_low_3
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 742; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 1 - 757
Target Start/End: Complemental strand, 49667853 - 49667096
Alignment:
| Q |
1 |
gatgatccaacaccatcaacatctgcctcctctacaacctcaaccccatctttcccactttctattctcctaagttcgtctaatacttcttccatagaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49667853 |
gatgatccaacaccatcaacatctgcctcctctacaacctcaaccccatctttcccactttctattctcctaagttcatctaatacttcttccatagaag |
49667754 |
T |
|
| Q |
101 |
gtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaaaaccaagagaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667753 |
gtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaaaaccaagagaagg |
49667654 |
T |
|
| Q |
201 |
atctacgagctcatcaattgcactttcttgaatcttctttgtggctagagttgacaagttaatctcttccctacttctgtttatatcaacagcaggcttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667653 |
atctacgagctcatcaattgcactttcttgaatcttctttgtggctagagttgacaagttaatctcttccctacttctgtttatatcaacagcaggcttt |
49667554 |
T |
|
| Q |
301 |
-gatgatattagttcaatgagcacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667553 |
tgatgatattagttcaatgagcacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggt |
49667454 |
T |
|
| Q |
400 |
gttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgccgtcaagaagta |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667453 |
gttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgccgtcaagaagta |
49667354 |
T |
|
| Q |
500 |
tgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaattttaagtcgtatagaccatgg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49667353 |
tgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaattttaattcgtatagaccatgg |
49667254 |
T |
|
| Q |
600 |
tagtaagtcgggcttggccaattcaccatggagatgacatgcaatggtaccatttgagatatattcatacacaagaagtagttcacgactgtgccgtgaa |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667253 |
tagtaagtcgggcttggccaattcaccatggagatgacatgcaatggtaccatttgagatatattcatacacaagaagtagttcacgactgtgccgtgaa |
49667154 |
T |
|
| Q |
700 |
gtgcatccatagagggacacaagatttttgtgccgcaaagttgtcagaatattgactt |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49667153 |
gtgcatccatagagggacacaagatttttgtgccgcaaagttgtcagaatattgactt |
49667096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 88 - 581
Target Start/End: Complemental strand, 49671737 - 49671244
Alignment:
| Q |
88 |
tcttccatagaaggtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaa |
187 |
Q |
| |
|
|||||||| |||||||| || || |||||| |||||||||| |||||||| || |||||||| ||||||||||||| || | |||| ||||||||| || |
|
|
| T |
49671737 |
tcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatcaa |
49671638 |
T |
|
| Q |
188 |
aaccaagagaaggatctacgagctcatcaattgcactttcttgaatcttctttgtggctagagttgacaagttaatctcttccctacttctgtttatatc |
287 |
Q |
| |
|
|||||||| ||||||| || | |||| | ||||| ||||| || |||||| ||| || |||||||||||||||| ||| || || || ||||| |
|
|
| T |
49671637 |
aaccaagataaggatccaccaactcaattaatgcaccctcttgtattttctttaaggccaggtttgacaagttaatctcatccttatgcctcttcatatc |
49671538 |
T |
|
| Q |
288 |
aacagcaggctttgatgatattagttcaatgagcacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtca |
387 |
Q |
| |
|
||| | | |||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||| || |||||||||| || || ||| |
|
|
| T |
49671537 |
aactggaagcttagatgatattagctcaatgaccacaacaccaaaactgtatacatcactcttgctagtaagctggtagcattggtgatattctggatca |
49671438 |
T |
|
| Q |
388 |
aggtaacctggtgttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgc |
487 |
Q |
| |
|
| ||||| ||||| |||||||| || ||||| |||| ||| ||| ||||||||| |||||||| ||||||||| ||||||| |||| || || |
|
|
| T |
49671437 |
acataacccggtgtcccttgtggtgccgtggaagcatgggtgatatcgagggggaatagccttgaaagaccaaaatctccaactttgacactgaagttat |
49671338 |
T |
|
| Q |
488 |
cgtcaagaagtatgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaatttt |
581 |
Q |
| |
|
| || || ||||| ||||||| ||||||||||| ||||| || |||||||| ||||||||||| | | || ||||||||||||||||| |
|
|
| T |
49671337 |
ctgtgaggagaatgtttttggtttttacgtcacggtggatgatgcctgaagcatgcagataagccaatgagcttgctgtctctatggcaatttt |
49671244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 121 - 577
Target Start/End: Complemental strand, 49675903 - 49675447
Alignment:
| Q |
121 |
tgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaaaaccaagagaaggatctacgagctcatcaattg |
220 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||| |||| ||||| || | ||||| | ||| ||||| |||||||| || ||||||| ||| |
|
|
| T |
49675903 |
tgcaaacactgaaaagccaactctgctatcaaaactattttccttttaacatccttatctgactcaaagccaagggaaggatccacaagctcatggattt |
49675804 |
T |
|
| Q |
221 |
cactttcttgaatcttctttgtggctagagttgacaagttaatctcttccctacttctgtttatatcaacagcaggctttgatgatattagttcaatgag |
320 |
Q |
| |
|
||||| |||||||||| | |||||| | ||| |||||| ||||| ||| || |||| | |||||||| || ||| | || ||||| || |||| || |
|
|
| T |
49675803 |
tacttttttgaatcttccgtatggctaaatttgccaagtttatctcatccttatctctgctcatatcaactgctggcatagacgatatcagctcaacaag |
49675704 |
T |
|
| Q |
321 |
cacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggtgttccttgtggagctgtggag |
420 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||| || |||| ||||| || || || | || || || ||||||||||||||||||||| |
|
|
| T |
49675703 |
tacaactccaaagctgtaaacatcactcttgcttgtaagcctgtagcattgatgatattccggatccatatatcccggggttccttgtggagctgtggag |
49675604 |
T |
|
| Q |
421 |
acatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgccgtcaagaagtatgttgctggttttcacgtcac |
520 |
Q |
| |
|
|| || ||| ||| | ||||| ||| |||| || ||||| ||||||||||||| | ||| || |||||| || |||||| | |||||||| |||| |
|
|
| T |
49675603 |
acgtgtgtgatatcatttgggaacagttttgatagtccaaagtctgcaactttaatgcaaaaggtgttgtcaaggagaatgttgtttgttttcacatcac |
49675504 |
T |
|
| Q |
521 |
ggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaa |
577 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
49675503 |
ggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaa |
49675447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 725
Target Start/End: Complemental strand, 49692786 - 49692362
Alignment:
| Q |
301 |
gatgatattagttcaatgagcacaactccaaaactatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggtg |
400 |
Q |
| |
|
||||||||||| || ||||||||||| ||||| ||||| ||||||||||| | |||| || | |||| || || |||||||||||||| || |
|
|
| T |
49692786 |
gatgatattagctcgatgagcacaacgccaaagctatacacatcactcttctccgatagcttgtagagttggaagtattcagggtcaaggtaacccggac |
49692687 |
T |
|
| Q |
401 |
ttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgccgtcaagaagtat |
500 |
Q |
| |
|
||||||||||||||||||| ||||| || |||| ||||| | ||||| || ||||||||||| | |||||| |||||| |||||| || || |
|
|
| T |
49692686 |
ttccttgtggagctgtggaaacatggctgacatcgctagggaacaaccttgatagtccaaaatctgctaacttaacagaaaaattaatgtcaagtagaat |
49692587 |
T |
|
| Q |
501 |
gttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaaggcattagcagtctctatggcaattttaagtcgtatagaccatggt |
600 |
Q |
| |
|
|||| ||||||| || |||||||||||||| | |||||||| ||||||||||| ||| ||| || ||||| || |||| | ||| ||| ||||| |
|
|
| T |
49692586 |
gttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatgcagaagcggtttctattgcgatttgcattcgaataagccatgtc |
49692487 |
T |
|
| Q |
601 |
agtaagtcgggcttggccaattcaccatggagatgacatgcaatggtaccatttgagatatattcatacacaagaagtagttcacgactgtgccgtgaag |
700 |
Q |
| |
|
|| || ||| | || || |||||||||||||| | || | || ||||||| | ||||||||| ||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
49692486 |
agcaaaccggctctagctaaatcaccatggagatggctagccacagttccatttggaacatattcatatacaagtagtagctcacggctgtgacgtgaag |
49692387 |
T |
|
| Q |
701 |
tgcatccatagagggacacaagatt |
725 |
Q |
| |
|
|||| |||||||||||||| ||||| |
|
|
| T |
49692386 |
tgcagccatagagggacactagatt |
49692362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 49693002 - 49692893
Alignment:
| Q |
85 |
acttcttccatagaaggtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaat |
184 |
Q |
| |
|
||||| ||||| ||||||||||| || |||| | ||| ||| |||||||||||||||||||||||| || |||||| ||||| ||||||||||| | |
|
|
| T |
49693002 |
acttcatccatggaaggtcttaattccatgtctcctagcacacattgaaaagccaattctgccactgaagttaccatcctgttaacttcactgtctgatt |
49692903 |
T |
|
| Q |
185 |
gaaaaccaag |
194 |
Q |
| |
|
||||||||| |
|
|
| T |
49692902 |
caaaaccaag |
49692893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 550
Target Start/End: Complemental strand, 22783736 - 22783580
Alignment:
| Q |
394 |
cctggtgttccttgtggagctgtggagacatgagtggcatcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaattgccgtcaa |
493 |
Q |
| |
|
|||||||||||| || ||||||||||| || ||| |||| | ||| ||||||||||||| |||||||| ||||| ||||||| |||||| ||||| |
|
|
| T |
22783736 |
cctggtgttcctctcggcgctgtggagacgtgtgtgacatcattagggtatagtcttgaaagaccaaaatcagcaaccttaacacagaaattgttgtcaa |
22783637 |
T |
|
| Q |
494 |
gaagtatgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataag |
550 |
Q |
| |
|
| || |||||| ||||||||||||| |||||||||| |||| ||||| ||||||| |
|
|
| T |
22783636 |
ggagaatgttggtggttttcacgtctcggtgaatgacatcagaggcatgaagataag |
22783580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University