View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_32 (Length: 244)
Name: NF8907_low_32
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 28451752 - 28451569
Alignment:
| Q |
17 |
gacatcaacagcatttgattcgcaatatcaaaaaacgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccacc |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451752 |
gacatcaacagcatttgattcgcaatataaaaaaacgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccacc |
28451653 |
T |
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| Q |
117 |
ctacttacttgctagcaggagcagtgctatttccattatttgcagaaccattaagacctggtttgctttcaccaacaccattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28451652 |
ctacttacttgctagcaggagcagtgctatttccattatttgcagaaccattaagacctggtttgctttcaccaacaccattag |
28451569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 19208246 - 19208420
Alignment:
| Q |
19 |
catcaacagcatttgattcgcaatatcaaaaaacgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccct |
118 |
Q |
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| T |
19208246 |
catcaacatcatttgactcgtagtatcaaaaatcgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcaca-------ccaccct |
19208338 |
T |
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| Q |
119 |
acttacttgctagcaggagcagtgctatttccattatttgcagaaccattaagacctggtttgctttcaccaacaccattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| |
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| T |
19208339 |
acttacttgctagcaggagcagtgctatttccattatttgcagaaccaataagacttggtttgctatcactgacaccattag |
19208420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 23738869 - 23738696
Alignment:
| Q |
19 |
catcaacagcatttgattcgcaatatcaaaaaacgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccct |
118 |
Q |
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| T |
23738869 |
catcaacatcatttgactcgtagtatcaaaaa-cgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacac-------caccct |
23738778 |
T |
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| Q |
119 |
acttacttgctagcaggagcagtgctatttccattatttgcagaaccattaagacctggtttgctttcaccaacaccattag |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||| |
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| T |
23738777 |
acttacttgctagcaggagtagtgctatttccattatttgcagaaccaataagagttggtttgctatcactgacaccattag |
23738696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 43916773 - 43916605
Alignment:
| Q |
18 |
acatcaacagcatttgattcgcaatatcaaaaaacgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacaccaccggccaccc |
117 |
Q |
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||||||||| |||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43916773 |
acatcaacaacatttgtttagcagtatcaaaaattgtaacatgtcctaaatttaaaaccttgcggtaaactctaatgccaattcacac-------caccc |
43916681 |
T |
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| Q |
118 |
tacttacttgctagcaggagcagtgctatttccattatttgcagaaccattaagacctggtttgctttcaccaaca |
193 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||| || | |||| |||||||||||||| |||| |
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| T |
43916680 |
tacttacttgctagcaggagcggtgctattttcattatttgcagaaacaatgagacttggtttgctttcactaaca |
43916605 |
T |
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