View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_4 (Length: 663)
Name: NF8907_low_4
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_4 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 42468042 - 42468438
Alignment:
| Q |
18 |
gaatcttttatccaagagnnnnnnnngaccagaaaacttcgacacatctgagcaagtaatagctcaataagtatacactcattattaatggaaaagacat |
117 |
Q |
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| T |
42468042 |
gaatcttttatccaagagagaaaaaagaccagaaaacttcgacacatctgagcaagtaatagctcaataagcatacactcattattaatggaaaagacat |
42468141 |
T |
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| Q |
118 |
attgactagtaacaatatatttgtagggatgaaatacataacgaagcttatattattttcatcctgcgtgatgcggatcaatatgtagctagcttacgta |
217 |
Q |
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| T |
42468142 |
attgactagta-caatatatttgtagggatgaaatacataatgaagcttatattattttcatcctgcgtgatgcaggtcaatatgtagctagcttacata |
42468240 |
T |
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| Q |
218 |
attaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattacatcaatttttattc-ttaagtatcacagtactggc |
316 |
Q |
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| T |
42468241 |
attaacaacagaagccaacaat-------tatgtggaaaacaacaaggagtcacacttttattacatcaatttttattctttaagtatcacagtactggc |
42468333 |
T |
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| Q |
317 |
agcattatgacgattagacagtcataccagtcacggttaattctgttcaggtattattccccgaagagatttccaattgtcaagagtttgagtcacagga |
416 |
Q |
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| T |
42468334 |
agcattatgacgattacacagtcataccagtcacggttaattctgttcaggtattattccccaaagagatttccaattgtcaagagttcgagtcacaaga |
42468433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 416 - 650
Target Start/End: Original strand, 42471130 - 42471357
Alignment:
| Q |
416 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatcc |
515 |
Q |
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| T |
42471130 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctt-------gtatgcttcattgatcttgtgagaggaaaaagctgcatcc |
42471222 |
T |
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| Q |
516 |
aatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
615 |
Q |
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| T |
42471223 |
aatccattttcaaagacagtgccatggaaacaagtaaacccatcgctgatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
42471322 |
T |
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| Q |
616 |
acttgtctcctttgaataagtaagcttctttgtct |
650 |
Q |
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| T |
42471323 |
acttgtctcctttgaataagtaagcttctttgtct |
42471357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 466 - 647
Target Start/End: Complemental strand, 3352608 - 3352427
Alignment:
| Q |
466 |
ctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaat |
565 |
Q |
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||||||||||||| ||||| || | || ||||| |||||||||||||| | |||||||||||||| |||||||||||||| ||||||| ||| |||| |
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| T |
3352608 |
ctttgaaaaagtaggcttcattagtcttatgagaagcaaaagctgcatcaattccattttcaaagattgtgccacggaaacacataaacccgtcgataat |
3352509 |
T |
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| Q |
566 |
gttctcgatactttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
647 |
Q |
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| T |
3352508 |
gttcttgatactttgaaccagacggttggttccataatctatacgagcatacttgtctcctttgaataagtaaacttatttg |
3352427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 647
Target Start/End: Original strand, 42046115 - 42046167
Alignment:
| Q |
595 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
647 |
Q |
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| T |
42046115 |
ttccatagtctatacgagcatattggtctcctttaaataagtaagcttctttg |
42046167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 495 - 648
Target Start/End: Original strand, 63205 - 63358
Alignment:
| Q |
495 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
594 |
Q |
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||||| |||||||| ||||| | ||| |||||||||| ||| | ||||||||||||||||| | | |||| | |||| ||||||| ||||| || | |
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| T |
63205 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
63304 |
T |
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| Q |
595 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
648 |
Q |
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| T |
63305 |
tgccatagtctatacgagcatacttgtctcctctgaacaagtaaacctctttgt |
63358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 648
Target Start/End: Original strand, 37149 - 37302
Alignment:
| Q |
495 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
594 |
Q |
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||||| |||||||| ||||| | ||| |||||||||| ||| | ||||||||||||||||| | | |||| | |||| ||||||| ||||| || | |
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| T |
37149 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
37248 |
T |
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| Q |
595 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
648 |
Q |
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| T |
37249 |
tgccatagtctatacgagcatacttatctcctctgaacaagtaaacctctttgt |
37302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 591 - 647
Target Start/End: Complemental strand, 14452764 - 14452708
Alignment:
| Q |
591 |
ttggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
647 |
Q |
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| T |
14452764 |
ttggtgccatagtctatacgagcatacttgtctcctttgaataagtgaacttctttg |
14452708 |
T |
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