View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_9 (Length: 564)
Name: NF8907_low_9
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 40511740 - 40511209
Alignment:
| Q |
18 |
cttaggagggtcgataataggaactataacaggagctatcaaaggacaaaccacagaagttggttttcttgatggagctggcaaaggagcaattgcagga |
117 |
Q |
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| T |
40511740 |
cttaggagggtcgataataggaactataacaggagctatcaaaggacaaaccacagaagttggttttcttgatggagctggcaaaggagcgattgcagga |
40511641 |
T |
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| Q |
118 |
gccattgcagccatagagtttatgagttttgcttatgtggccgtgggtgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactc |
217 |
Q |
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| T |
40511640 |
gccattgcagccatagaatttatgagttttgcttatgtggccgtgggtgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactc |
40511541 |
T |
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| Q |
218 |
tcctgatcgaataagtaccgtatttgatactaacatgacacgaccctgatatatatggttacattcaatctttttcaatttttgtatatttttattggcg |
317 |
Q |
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| T |
40511540 |
tcctgatcgaataagtaccgtatttgatactaacatgacacgaccctgatatatatggttacattcaatctttttcaatttttgtatatttttattggcg |
40511441 |
T |
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| Q |
318 |
tcaaggtgttggtgtcaatattgtgtcatgtgtccatgcccatggcaaaacatagtggcaacgtatagtgactaaaacttagaactattttacattttta |
417 |
Q |
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| T |
40511440 |
tcgaggtgttggtgtcaatattgtgtcatgtgtctatgcccatggcaaaacatagtgg---------gtgactaaaacttacaactattttacattttta |
40511350 |
T |
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| Q |
418 |
ttgctttatccccttactttaatccaattgagatggtgttcttctcaacta----nnnnnnnnnnnnnnggtgtggaattgtaggttgctttgttgagaa |
513 |
Q |
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| T |
40511349 |
ttgctttatccccttactttaatccaattgagatggtgttcttctcaactattttttttttttttttttggtgtggaattgtaggttgctttgttgagaa |
40511250 |
T |
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| Q |
514 |
gtttactaaatggaaaagtatttacggaatggagatgtcca |
554 |
Q |
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| T |
40511249 |
gtttactaaatggaaaagtatttacggaatggatatgtcca |
40511209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 40520501 - 40520337
Alignment:
| Q |
18 |
cttaggagggtcgataataggaactataacaggagctatcaaaggacaaaccacagaagttggttttcttgatggagctggcaaaggagcaattgcagga |
117 |
Q |
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| T |
40520501 |
cttaggagggtcaataataggaacaatagcaggagctatcaaaggtcagaccacagaaactggttttcttgatggagctggaaaaggagcaattgcagga |
40520402 |
T |
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| Q |
118 |
gccattgcagccatagagtttatgagttttgcttatgtggccgtgggtgagccattttccaaggtaacaat |
188 |
Q |
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| T |
40520401 |
gccattgcagccatagaactgatgagttttgcttctgtggc------tgagccattttccaaggtaacaat |
40520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 40520242 - 40520171
Alignment:
| Q |
483 |
ggtgtggaattgtaggttgctttgttgagaagtttactaaatggaaaagtatttacggaatggagatgtcca |
554 |
Q |
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| T |
40520242 |
ggtgtggaattgcaggttgcgttgttgagaagtttattaaatgggaaagtgtttatggaatggatatgtcca |
40520171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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