View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_10 (Length: 551)
Name: NF8908_high_10
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 34034045 - 34034575
Alignment:
| Q |
1 |
agaaaatataacaagagtatgagagggtgttgccccaaattgatcgtacaaatatcttgtgtcgttttcattgaaatactattttatgagccaatcacta |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34034045 |
agaaaacataacaagagtatgagagggtgttgccccaaaatgatcgtacaaatatcttgtgccgttttcattgaaatactattttatgagccaatcacta |
34034144 |
T |
|
| Q |
101 |
aacacaacaaattgttttaccatgagtgaaggtcaaacttttgnnnnnnnttattatttctatctttactatttgatgactttagtttatctatgagaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
34034145 |
aacacaacaaattgttttaccatgagtgaaggtcaaacttttgaaaaaaaatattatttctatctttactatttggtgactttagtttat-tatgagaga |
34034243 |
T |
|
| Q |
201 |
ttgatgattaaaataacttgctcagattagagagactgatttgccaagagaaagatatattggaagttatcaaagataaacaatggaaagttatctcaat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034244 |
ttgatgattaaaataacttgcttagattagagagactgatttgccaagagaaagatatattggaagttatcaaagataaacaatggaaagttatctcaat |
34034343 |
T |
|
| Q |
301 |
aggttccatgcatgttgtgatattttttggataaaaaatattaatctgctaccataaaattgtttattctaatttatatttgttctttgcttcattatat |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034344 |
agattccatgcatgttgtgatattttttggataaaaaatattaatctgctaatataaaattgtttattctaatttatatttgttctttgcttcattatat |
34034443 |
T |
|
| Q |
401 |
ttaattttttgtggtgcagttggtcaattgggttccaccttatgagaatcaagtagctttgaatgttgatggaagttctctcggaaaccctggtcaggcg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034444 |
ttaattttttgtggtgcagttggtcaattgggttccaccttacgagaatcaagtagttttgaatgttgatggaagttctctcggaaaccctggtcaggcg |
34034543 |
T |
|
| Q |
501 |
gggtttggaggtttaattcgagatcacaacgg |
532 |
Q |
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| T |
34034544 |
gggtttggaggtttaattcgagatcacaacgg |
34034575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 34888193 - 34888723
Alignment:
| Q |
1 |
agaaaatataacaagagtatgagagggtgttgccccaaattgatcgtacaaatatcttgtgtcgttttcattgaaatactattttatgagccaatcacta |
100 |
Q |
| |
|
|||||| |||||||||||||||| | | |||| | ||| | || ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
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| T |
34888193 |
agaaaacataacaagagtatgagtgagagttgttctaaaataattgtacaaatatcttgtatcgttttcattgaaatacttttttatgaaccaatcacta |
34888292 |
T |
|
| Q |
101 |
aacacaacaaattgttttaccatgagtgaag-----gtcaaacttttgnnnnnnnttattatttctatctttactatttgatgactttagtttatctatg |
195 |
Q |
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|| | |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
34888293 |
aagaaaacaaattgttttaccatgagtgaagtgaaggtcaaacttttgaaaaaaa--attatttctatctttactatttggcgacttttgtttatctatg |
34888390 |
T |
|
| Q |
196 |
agagattgatgattaaaataacttgctcagattagagagactgatttgccaagagaaagat----atattggaagttatcaaagataaacaatggaaagt |
291 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||| |
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| T |
34888391 |
agagattgatgattaaaataacttgcttagattagagagactgatttggtaagagaaagatataaatattgaaagttatcaaagataaac----gatagt |
34888486 |
T |
|
| Q |
292 |
tatctcaataggttccatgcatgttgtgatattttttggataaaaaatattaatctgctaccataaaattgtttattct-aatttatatttgttctttgc |
390 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
34888487 |
tatctcaataggttccatgcatgttgtgatatttttaggataaaaaatatttatctgctaccataaaattgtttattctaaaattatatttgtt-tttgc |
34888585 |
T |
|
| Q |
391 |
ttcattatatttaattttttgtggtgcagttggtcaattgggttccaccttatgagaatcaagtagctttgaatgttgatggaagttctctcggaaaccc |
490 |
Q |
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|||||||| ||||||||||| | ||||| ||||||||||||||||||||| | ||||||||||| ||||| || ||||||| |||| |||||||| | | |
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| T |
34888586 |
ttcattatgtttaatttttttttgtgcaattggtcaattgggttccacctaacgagaatcaagtggctttaaacgttgatgagagttatctcggaagctc |
34888685 |
T |
|
| Q |
491 |
tggtcaggcggggtttggaggtttaattcgagatcaca |
528 |
Q |
| |
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|||| ||| | ||||||||||||||||||||||||| |
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| T |
34888686 |
tggtagggcatgttttggaggtttaattcgagatcaca |
34888723 |
T |
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Back To:
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