View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_17 (Length: 502)
Name: NF8908_high_17
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 51318567 - 51318071
Alignment:
| Q |
1 |
agaagagtgagaattaaagttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtgcgagttttgaggagaaagggtgag |
100 |
Q |
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| T |
51318567 |
agaagagtgagaattaacgttacgttaaaatggaagaaaagggtggaagaggagttacctgacggtgacggaagtgcgagttttgaggagaaagggtgag |
51318468 |
T |
|
| Q |
101 |
aaggaggaagaggaggatttgggtttgttgatggtggatttgatcagagagaatgctggttgagaaaatgatctgtaacgagaagccattgaagaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51318467 |
aaggaggaagaggaggatttgggtttgttgatggtggatttgatcagagagaatgctggttgagaaaatgatctgtaacgagaagccattgaagaacaaa |
51318368 |
T |
|
| Q |
201 |
tcggcgccaccccccaaattttcgcacacctagggtttatacttactagttactacacaatagatagtacaaaggaaagggttttcccgaggtttcaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51318367 |
tcggcgccaccccccaaattttcgcacacctagggtttatac-------ttaccacacaatagatagtacaaaggaaagggttttcccgaggtttcaata |
51318275 |
T |
|
| Q |
301 |
ttttaattttccttttcatataca-----------tacgc--------ttacattcaataagatcatttttatgccgatagtacatataaatttaaccca |
381 |
Q |
| |
|
|||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51318274 |
ttttaattttccttttcatatacattgtaaaaatttacaccaagttaatcacaatcaataagatcatttttatgccgacagtacatataaatttaaccca |
51318175 |
T |
|
| Q |
382 |
tcatcgtatttttctttgttatcttaaccttcaattatttaaaaaggatgatagtaatttagagtcttataaaatataaatacgatctcaccggtacttc |
481 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||| |
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| T |
51318174 |
tcatcgtatttttctttgttatcttaaccttccattatttaaaaaggatgatagtaatttagagtcttataaaatataagtacgatctcatcggcatttc |
51318075 |
T |
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