View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_23 (Length: 457)
Name: NF8908_high_23
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 9630045 - 9630469
Alignment:
| Q |
17 |
tgagcttgatgtttcaagaaacgacgtgtctggtatattagaccgtcgtttgtttcctgatggcactgataagcccagaactgggcttatcagtatcagg |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9630045 |
tgagcttgatgtttcaagaaacgatgtgtctggtatattagaccgtcgtttgtttcctgatggcactgataagcccagttctgggcttatcagtatcagg |
9630144 |
T |
|
| Q |
117 |
aatcttcttttccaagatacccttttgggcggtcgattaccaaacgaaatagggaacataaaaaacttgactatactagcacttgatgcaaacaatttct |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9630145 |
aatctacttttccaagatacccttttgggcggtcgattaccaaacgaaatagggaacataaaaaacttgactatactagcacttgatggaaacaatttct |
9630244 |
T |
|
| Q |
217 |
ttggtcctattccttcatctctaggaaactgtaaaaatttaagcattctgagattgaatgaaaaccaattctctggctcaataccaccgagtattggaaa |
316 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
9630245 |
ttggtcctattccttcatctttaggaaactgtaaacatttaagcattctaagattgaatgaaaaccaattatctggctcaataccaccaagtattggcaa |
9630344 |
T |
|
| Q |
317 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcactgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9630345 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcaccgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
9630444 |
T |
|
| Q |
417 |
gctgagaacaatttcattggtgagt |
441 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
9630445 |
gctgagaacaatttcattggtgagt |
9630469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 9630138 - 9630109
Alignment:
| Q |
81 |
actgataagcccagaactgggcttatcagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9630138 |
actgataagcccagaactgggcttatcagt |
9630109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 13607201 - 13606777
Alignment:
| Q |
17 |
tgagcttgatgtttcaagaaacgacgtgtctggtatattagaccgtcgtttgtttcctgatggcactgataagcccagaactgggcttatcagtatcagg |
116 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
13607201 |
tgagcttgatgtttcatgaaacgatgtttctggtatattagaccttcgtttgtttcctgatggcactgataagcccagttctgggcttatcagtatcagg |
13607102 |
T |
|
| Q |
117 |
aatcttcttttccaagatacccttttgggcggtcgattaccaaacgaaatagggaacataaaaaacttgactatactagcacttgatgcaaacaatttct |
216 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13607101 |
aatctacttttccaagatatctttttgggcggtcgattacctaacgaattagggaacataaaaaacttgactatactagcacttgatggaaacaatttct |
13607002 |
T |
|
| Q |
217 |
ttggtcctattccttcatctctaggaaactgtaaaaatttaagcattctgagattgaatgaaaaccaattctctggctcaataccaccgagtattggaaa |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || |
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|
| T |
13607001 |
ttggtcctattccttcatctttaggaaactgtaaacatttaagcattctaagattgaatgaaaaccaattatctggctcaataccaccaagtattggcaa |
13606902 |
T |
|
| Q |
317 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcactgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13606901 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcaccgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
13606802 |
T |
|
| Q |
417 |
gctgagaacaatttcattggtgagt |
441 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13606801 |
gctgagaacaatttcattggtgagt |
13606777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 13902804 - 13903228
Alignment:
| Q |
17 |
tgagcttgatgtttcaagaaacgacgtgtctggtatattagaccgtcgtttgtttcctgatggcactgataagcccagaactgggcttatcagtatcagg |
116 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| |
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|
| T |
13902804 |
tgagcttgatgtttcacgaaacgacgtatctggtatactagaccatcgtttgtttcctgatggcactgataaactcagttctgggcttatcagcatcagg |
13902903 |
T |
|
| Q |
117 |
aatcttcttttccaagatacccttttgggcggtcgattaccaaacgaaatagggaacataaaaaacttgactatactagcacttgatgcaaacaatttct |
216 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
13902904 |
aatctacttttccaagataactttttgggcggtcgattaccgaacgaattagggaacataaaaaacttgactgtactagcacttgatggaaacaatttct |
13903003 |
T |
|
| Q |
217 |
ttggtcctattccttcatctctaggaaactgtaaaaatttaagcattctgagattgaatgaaaaccaattctctggctcaataccaccgagtattggaaa |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || |
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|
| T |
13903004 |
ttggtcctattccttcatctttaggaaactgtaaacatttaagcattctaagattgaatgaaaaccaattatctggctcaataccaccaagtattggcaa |
13903103 |
T |
|
| Q |
317 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcactgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13903104 |
attgaccaacctaactgatgtaaggtttttcaccaataacctaaatggcactgtgccacaagaatttggaaacctttcatctttggttgttttacatctt |
13903203 |
T |
|
| Q |
417 |
gctgagaacaatttcattggtgagt |
441 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13903204 |
gctgagaacaatttcattggtgagt |
13903228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 13607108 - 13607137
Alignment:
| Q |
81 |
actgataagcccagaactgggcttatcagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13607108 |
actgataagcccagaactgggcttatcagt |
13607137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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