View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_30 (Length: 416)
Name: NF8908_high_30
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_30 |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: scaffold0369 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 12355 - 12608
Alignment:
| Q |
11 |
agtttggagttggtatgggattcccgagaaagagaaacaaaaaataccccaattaataagctacaaaagttagtagaaaatattattaaaactatgctat |
110 |
Q |
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| T |
12355 |
agtttggagttggtatgggagtcccgagaaagagaaacaaaaaataccccaattaataagctacataa----------aaaattcttaaagctatgctat |
12444 |
T |
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| Q |
111 |
ggcttatgagctgtactcgaccactactgctagtattattttatagtttgattttacaatctataaaagctccggtaaaaacttaagagnnnnnnncttc |
210 |
Q |
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| T |
12445 |
ggcttatgagctgtactcgaccactactgctagtattattttatagtttgattttacaatctataaaagctccggtaaaaacttaagagaaaaaaacttc |
12544 |
T |
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| Q |
211 |
atatacttaattttttaaaatttattaccatatgattgtttaatactttttaagtgaaactgac |
274 |
Q |
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| T |
12545 |
atatacttaattttttaaaatttattaccatatgattgtttaatactttttaagtgaaactgac |
12608 |
T |
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Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 42904495 - 42904322
Alignment:
| Q |
11 |
agtttggagttggtatgggattcccgagaaagagaaacaaaaaataccccaattaataagctaca-------aaagttagtagaaaatattattaaaact |
103 |
Q |
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| T |
42904495 |
agtttggagttgatatgggagtcccgagaaagagaaacaaaaaatatcccagttaataagctacatggttcaaaagttagtagaaaaaattattaaagct |
42904396 |
T |
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| Q |
104 |
atgctatggcttatgagctgtactcgaccactactgctagtattattttatagtttgattttacaatctataaa |
177 |
Q |
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| T |
42904395 |
atgctatggcttatgagctgtactcgaccactactactagtattattttatagtttgattttacaatctataaa |
42904322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 42900066 - 42899998
Alignment:
| Q |
207 |
cttcatatacttaattttttaaaatttattaccatatgattgtttaata-ctttttaagtgaaactgac |
274 |
Q |
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| T |
42900066 |
cttcatatacttaattttttaaaatttattaccatatgattgtttaatatttttttaagtgaaactgac |
42899998 |
T |
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