View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_32 (Length: 396)
Name: NF8908_high_32
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 32229786 - 32230168
Alignment:
| Q |
1 |
tataggataggatatactaagttggatccaatatgtaaggtaatagagttatgctctttactttactgatcctgcctctgtttatatttttcttaattct |
100 |
Q |
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| T |
32229786 |
tataggataggatatactaagttggatccaatatgtaaggtaacagagttatgctctttactttactgatcctgcctctgtttatatttttcttaattct |
32229885 |
T |
|
| Q |
101 |
gttgcatatatattattcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgtgctctttcaacatgtgttaattaaattga |
200 |
Q |
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| T |
32229886 |
gttgcatatatattattcaattctgtttcctttctcgtattttcttctcttttggctaagtcaaattttgtgctctttcaacatgtgttaattaaattga |
32229985 |
T |
|
| Q |
201 |
gattaatttcgatacaccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacattgtcatatgatattttat |
300 |
Q |
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| T |
32229986 |
gattaatttcgatacaccataagttgatatacaatagcaaataaaagtttgagaaacattaacagaattgtctaattgacattgtcatatgatattttat |
32230085 |
T |
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| Q |
301 |
aatttgcatatcttgaaactgattaagccttagaaaagaagaaaaaccaagtgtattttgtatactgcaactatacatgatgt |
383 |
Q |
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| T |
32230086 |
aatttgcatatcttgaaactgattgagccttagaaaagaagaaaaaccaagtgttttttgtatactgcaactatacatgatgt |
32230168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 32224937 - 32225138
Alignment:
| Q |
1 |
tataggataggatatactaagttggatccaatatgtaaggtaatagagttatgctctttactttactgatcctgcctctg----tttatatttttcttaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||| ||||| |||||| ||| |
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| T |
32224937 |
tataggataggatatactaagttggatccaatatgtaaggtaacagagctctgctcttcactttactgatcctgcctctgattgtttatgtttttcctaa |
32225036 |
T |
|
| Q |
97 |
ttctgttgcatatatattattcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgtgctctttcaacatgtgttaattaaa |
196 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| |||| | |||||||||||||| |
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| T |
32225037 |
ttctgttgcatatttattattcaattctgtttcctttctcttattttgttctcttttggctacttcaaattttgtgctttttctatatgtgttaattaaa |
32225136 |
T |
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| Q |
197 |
tt |
198 |
Q |
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|| |
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| T |
32225137 |
tt |
32225138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 32210810 - 32210865
Alignment:
| Q |
116 |
ttcaattctgtttcctttctcgtattttcttctcttttggctacgtcaaattttgt |
171 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||| | | ||||||||| |
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| T |
32210810 |
ttcaatcctgtttcctttctagtattttgttctcttttggcttcatgaaattttgt |
32210865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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