View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_4 (Length: 767)
Name: NF8908_high_4
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 399 - 754
Target Start/End: Original strand, 386270 - 386624
Alignment:
| Q |
399 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
498 |
Q |
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| T |
386270 |
tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat |
386369 |
T |
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| Q |
499 |
caaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataatcaaaacttggaaaaagttccaccttgaagatttctcaa |
598 |
Q |
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| T |
386370 |
caaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataatcaaaacttgtaaaaagttcca-cttgaagatttctcaa |
386468 |
T |
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| Q |
599 |
gaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
698 |
Q |
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| T |
386469 |
gaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcatgcctgaaataggaactcaagaat |
386568 |
T |
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| Q |
699 |
acaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
754 |
Q |
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| T |
386569 |
acaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 385871 - 386245
Alignment:
| Q |
2 |
cactcatggagttccaaataaaacctatatatgcaggaagaaagaccaaagtgcccaattaaagaagtggtatgttcggattccaatatattgacattaa |
101 |
Q |
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| T |
385871 |
cacttatggagttccaaataagacctat----gcaggaagaaagaccaaagtgcccaattaaagaagtggtatggacggattccaat----tgacattaa |
385962 |
T |
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| Q |
102 |
tctcatgcaatgtagcttcaataaaagatgggggcggttaaagaggtgacaatgaaccataataagatacttcttaaggtttcctgatgaagggatagaa |
201 |
Q |
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| T |
385963 |
tctcatgcaatgtagcttcaataaaagatgggggcggttaaagaggtgacaatgaaccataataagatacttcttaaggttgcctgatgaagggatataa |
386062 |
T |
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| Q |
202 |
aatcgttatattcacaattattccaactttgaacaatattatgtaaatttggacggacccatgtaaactatatttcaatggcttatgccacaataaaggt |
301 |
Q |
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| T |
386063 |
aatcgttatattcacaattattccaactttgaacaatattatgtaaatttggac----ccatgtaaactatatttcaatggcttatgccacaataaaggt |
386158 |
T |
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| Q |
302 |
agtgggatcataatattgcccttctggtgagtttttagttgacaggtttacatgtatgtaacttacaaatcgatgaaacatgtgggttgttttaatatag |
401 |
Q |
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| T |
386159 |
agtgggatcataatattgcccttctggtgagtttttagttgacaggtttac---------------aaatcgatgaaacatgtgggttgttttaatatag |
386243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 668 - 754
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
668 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
754 |
Q |
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| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 669 - 754
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
669 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
754 |
Q |
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| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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