View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_40 (Length: 339)
Name: NF8908_high_40
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 9186478 - 9186327
Alignment:
| Q |
1 |
aggagaatctgtttattcacaaaggcatgg------atgttttgctatggtaaaggagcataagtccaggttctatattgttagaagatgtataatgatt |
94 |
Q |
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| T |
9186478 |
aggagaatctgtttattcacaaaggcatggtggaggatgttttgctatggtaaaggagcataagtccaggttctatattgttagaagatgtataatgatt |
9186379 |
T |
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| Q |
95 |
ctaatttgttggcataaatatgatcattaagtattgagatcatgaataatctt |
147 |
Q |
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| T |
9186378 |
ctaatttgttggcataaatatgatca-taagtattgagatcatgaataatctt |
9186327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 9186292 - 9186157
Alignment:
| Q |
185 |
acattaagaatgaacagttcttgtttttgtatcataaataattagctagaacaggctttgttttgtgagacagttctgtctcttgttgaatctgttgatg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9186292 |
acattaagaatgaacagttcttgtttttgtatcataaataattagctagaacaggctttgt-----gagacagttctgtctcttgttgaatctgttgatg |
9186198 |
T |
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| Q |
285 |
cataattcatgtccctcttttcttctttttcatattgttag |
325 |
Q |
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| T |
9186197 |
cataattcatgtccctcttttcttctttttcatattgttag |
9186157 |
T |
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