View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_43 (Length: 331)
Name: NF8908_high_43
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_43 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 39509924 - 39510240
Alignment:
| Q |
15 |
catcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaat |
114 |
Q |
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|||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39509924 |
catcaagcaatatgttagtggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaat |
39510023 |
T |
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| Q |
115 |
ctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
39510024 |
ctcaagcctttgcttccaagtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtccccttttccatgtactcataaacaagtatcatc |
39510123 |
T |
|
| Q |
215 |
tcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
39510124 |
tcatacctttcatcacaatacccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaaccattatctcagtctgaaattcaggtagtccttgac |
39510223 |
T |
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| Q |
315 |
ctgaccctggctcactt |
331 |
Q |
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||||||||||||||||| |
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| T |
39510224 |
ctgaccctggctcactt |
39510240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 39579357 - 39579663
Alignment:
| Q |
15 |
catcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaat |
114 |
Q |
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||||||||||||| || |||||||| ||||| ||||| || || |||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
39579357 |
catcaagcaatatattagtggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaat |
39579456 |
T |
|
| Q |
115 |
ctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatc |
214 |
Q |
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| T |
39579457 |
ctcaagcctttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtccctttttccatatattcataaacaagtatcatc |
39579556 |
T |
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| Q |
215 |
tcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgac |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||| |||||||||| |
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| T |
39579557 |
tcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagcttcaaattcaggaagtccttgac |
39579656 |
T |
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| Q |
315 |
ctgaccc |
321 |
Q |
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||||||| |
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| T |
39579657 |
ctgaccc |
39579663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 39574826 - 39575131
Alignment:
| Q |
17 |
tcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatct |
116 |
Q |
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||||||||||| || |||||||| ||||| ||||| || || ||||| ||| | |||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
39574826 |
tcaagcaatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatct |
39574925 |
T |
|
| Q |
117 |
caagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatctc |
216 |
Q |
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|||||||||||||||||||||| || ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39574926 |
caagcctttgcttccaagtcaa---acaaggcaaatttgtatcgtacaaattatctctaagtgtcccattttccatgtactcgtaaacaagtatcatctc |
39575022 |
T |
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| Q |
217 |
atacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacct |
316 |
Q |
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| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
39575023 |
acacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacct |
39575122 |
T |
|
| Q |
317 |
gaccctggc |
325 |
Q |
| |
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|| |||||| |
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| T |
39575123 |
gaacctggc |
39575131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 39542989 - 39543302
Alignment:
| Q |
15 |
catcaagcaatatgtttgtggattttacatcgcggtgaatgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaat |
114 |
Q |
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||||||||||||| || |||||||| || || |||||||| || ||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
39542989 |
catcaagcaatatattagtggatttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaat |
39543088 |
T |
|
| Q |
115 |
ctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatc |
214 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| | |||| | | | || |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39543089 |
ctcaagcctttgcttccaagtc---aaacaaggcaaatttgtattgtataaattctccctaagtgtaccattttccatgtactcataaacaagtatcatc |
39543185 |
T |
|
| Q |
215 |
tcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgac |
314 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |
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| T |
39543186 |
tcacacctttcatcacaataccctattaaggaaacaaggtgtttgtgacgaatcttggacagaaccattatctcagtttgaaattcatgttgtccttgac |
39543285 |
T |
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| Q |
315 |
ctgaccctggctcactt |
331 |
Q |
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|||| || ||| ||||| |
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| T |
39543286 |
ctgaacccggcacactt |
39543302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 39520340 - 39520498
Alignment:
| Q |
173 |
ctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttg |
272 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
273 |
acaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcactt |
331 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
39520440 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcactt |
39520498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 35904669 - 35904726
Alignment:
| Q |
75 |
tgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttcca |
132 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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