View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_49 (Length: 305)
Name: NF8908_high_49
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 26343237 - 26343384
Alignment:
| Q |
148 |
cactacagtatatagtattgaatgtaaaactgatgctgattgtccaataagtaagttaaatatgtataactggagatgcattaaaagtgcatgtcatctg |
247 |
Q |
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| T |
26343237 |
cactacagtatatattattgaatgtaaaactgatgctgattgtccaataagtaagttaaatatgtataactggagatgcattaaaagttcatgtcatctg |
26343336 |
T |
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| Q |
248 |
tataaagtcattcaatttctggtatgagtaccaggcccaagagaataa |
295 |
Q |
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| T |
26343337 |
tataaagtcattcaatttatggtatgagtaccaggaccaagagaataa |
26343384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 26349984 - 26350127
Alignment:
| Q |
148 |
cactacagtatatagtattgaatgtaaaactgatgctgattgtccaataagtaagttaaatatgtataactggagatgcattaaaagtgcatgtcatctg |
247 |
Q |
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| T |
26349984 |
cactacagttgatatttttgtatgtcaaactgatgctgattgtccaaaaagtgagttaagtatgtatacctggaagtgcattgataatgaatgcaatctg |
26350083 |
T |
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| Q |
248 |
tataaagtcattcaatttctggtatgagtaccaggcccaagaga |
291 |
Q |
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| T |
26350084 |
tttaaagtcatgcaacagatggtatgagtatcaggcccaagaga |
26350127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26343107 - 26343147
Alignment:
| Q |
18 |
atttccatgtttcttgtttcaaagaacgttgcttgtaagac |
58 |
Q |
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| T |
26343107 |
atttccttgtttcttgtttcaaagaacgttgcttgtaagac |
26343147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 26340047 - 26340095
Alignment:
| Q |
151 |
tacagtatatagtattgaatgtaaaactgatgctgattgtccaataagt |
199 |
Q |
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| T |
26340047 |
tacagcatatattattgaatgtaaaaccgataatgattgtccaataagt |
26340095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26349854 - 26349894
Alignment:
| Q |
18 |
atttccatgtttcttgtttcaaagaacgttgcttgtaagac |
58 |
Q |
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| T |
26349854 |
atttccttgtttcttgtttcaaagaatgttgctagtaagac |
26349894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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