View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_high_5 (Length: 677)

Name: NF8908_high_5
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_high_5
NF8908_high_5
[»] chr7 (1 HSPs)
chr7 (5-656)||(47678005-47678654)


Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 5 - 656
Target Start/End: Complemental strand, 47678654 - 47678005
Alignment:
Q  5 ttgcaatgtgaagaccataatacatagccttttttagcatttgttagtttgcaagttacagcagaggtgagtgagtccacatacacatatgtctgagtct 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  47678654 ttgcaatgtgaagaccataatacatagccttttttagcatttgttagtttgcaagttacagcagaggtgagtgagtccacataca--tatgtctgagtct 47678557  T
Q  105 gagaccacaacagttctttgccttgccttaaatgactttgcaataatgtgcggtactatagttttttggctcacttctgtgttttaccatgtgacctggt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678556 gagaccacaacagttctttgccttgccttaaatgactttgcaataatgtgcggtactatagttttttggctcacttctgtgttttaccatgtgacctggt 47678457  T
Q  205 gggggaaatgccccccaaatttttgacactttctgccaaaacaaaattccaatgctcgagaatctatcaattatatgcatcactcaaaccttgctactgt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678456 gggggaaatgccccccaaatttttgacactttctgccaaaacaaaattccaatgctcgagaatctatcaattatatgcatcactcaaaccttgctactgt 47678357  T
Q  305 aagtaatacatttacaaggaattcataagacactttaagcaaattatcacaagttaaatacaactctttcaccatggagaatccactttgtgtgtttaac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47678356 aagtaatacatttacaaggaattcataagacactttaagcaaattatcacaagttaaatacaactctttcaccatggagaatccactttgtgtgtttaac 47678257  T
Q  405 aaattattaggagtttgataggactcttgtattttactatagagaatcgactttgcatgtttaatgaacttatcgatggagattagttatcgttaaatat 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47678256 aaattattaggagtttgataggactcttgtattttactatagagaatcgactttgcatgtttaatgaatttatcgatggagattagttatcgttaaatat 47678157  T
Q  505 aaaacaatacttattggaaagttaattatataatggacttttaacgtctaagaagatatccaacaccataattttataaggnnnnnnnnnnnnnnnnnnn 604  Q
    ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                       
T  47678156 aaaccaatacttattgaaaagttaataatataatggacttttaacgtctaagaagatatccaacaccataattttataaggtttttgttttcattttttt 47678057  T
Q  605 ctccaatctaacgaaccactttcgagagagcaacacctttggtattacgtaa 656  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47678056 ctccaatctaacgaaccactttcgaaagagcaacacctttggtattacgtaa 47678005  T

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