View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_high_69 (Length: 238)
Name: NF8908_high_69
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 9235582 - 9235387
Alignment:
| Q |
22 |
gtattctatacattatttgttgaagtgtatcaaaattcaaaatctttttcaagtagttatctgaggtaatgagttgtttggttacaataatatgctgcag |
121 |
Q |
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| T |
9235582 |
gtattcttcacattatttattgaagtgtatcaaaattcaaaatctttttcaagtagttatctgaggtaatgagttgtttggttacaataatatgctgcag |
9235483 |
T |
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| Q |
122 |
cg---------ttttgttacatcagttgcggactataattgagttaactgagttatataatggcggctattagttcaagacgtattcatgtaaatttt |
210 |
Q |
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| T |
9235482 |
cgttgtgctatttttgttacatcagttgcagactataattgagttaactgaattatgttatgactgctattagttcaagac--attcatgtaaatttt |
9235387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 9378474 - 9378556
Alignment:
| Q |
38 |
ttgttgaagtgtatcaaaattcaaaatctttttcaagtagttat-ctgaggtaatgagttgtttggttacaataatatgctgc |
119 |
Q |
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| T |
9378474 |
ttgttgaagtctatcaaaattgaaaatatatttcaaatagttatgctgaagcaatcagttttatggttacaataatatgctgc |
9378556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 9378694 - 9378726
Alignment:
| Q |
190 |
agacgtattcatgtaaattttctgagaaataga |
222 |
Q |
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| T |
9378694 |
agacgtattcatgtaaattttatgagaaataga |
9378726 |
T |
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