View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_high_75 (Length: 202)

Name: NF8908_high_75
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_high_75
NF8908_high_75
[»] chr8 (12 HSPs)
chr8 (1-174)||(1788845-1789018)
chr8 (53-188)||(17028339-17028474)
chr8 (53-188)||(17558775-17558910)
chr8 (53-170)||(39655697-39655814)
chr8 (53-170)||(21185319-21185436)
chr8 (53-174)||(38678685-38678803)
chr8 (107-174)||(38676306-38676373)
chr8 (86-173)||(21347111-21347198)
chr8 (53-92)||(38676894-38676933)
chr8 (80-174)||(4326700-4326793)
chr8 (53-91)||(17088768-17088806)
chr8 (57-123)||(31183750-31183816)
[»] chr7 (11 HSPs)
chr7 (1-189)||(31210021-31210209)
chr7 (53-189)||(31206624-31206760)
chr7 (55-174)||(11674000-11674118)
chr7 (56-174)||(39426452-39426570)
chr7 (56-174)||(3850540-3850659)
chr7 (53-128)||(22301149-22301224)
chr7 (53-178)||(15569561-15569685)
chr7 (22-138)||(13815772-13815887)
chr7 (58-129)||(32352432-32352502)
chr7 (53-178)||(2609600-2609724)
chr7 (64-173)||(5434870-5434980)
[»] chr4 (8 HSPs)
chr4 (1-182)||(6667665-6667846)
chr4 (1-182)||(6671337-6671512)
chr4 (53-189)||(44643436-44643571)
chr4 (53-182)||(13010531-13010659)
chr4 (53-152)||(895463-895562)
chr4 (53-129)||(20058101-20058177)
chr4 (57-178)||(31767450-31767570)
chr4 (57-129)||(43287892-43287964)
[»] chr2 (10 HSPs)
chr2 (53-174)||(2590499-2590620)
chr2 (53-174)||(21189400-21189521)
chr2 (57-178)||(18739113-18739234)
chr2 (53-174)||(14433597-14433719)
chr2 (52-174)||(35969274-35969392)
chr2 (75-170)||(1043148-1043242)
chr2 (1-151)||(8424484-8424634)
chr2 (57-138)||(27083092-27083173)
chr2 (57-117)||(10941428-10941486)
chr2 (57-117)||(10947297-10947355)
[»] chr6 (8 HSPs)
chr6 (56-174)||(19697846-19697964)
chr6 (53-144)||(6591847-6591938)
chr6 (22-138)||(24044901-24045016)
chr6 (1-178)||(3835606-3835782)
chr6 (6-138)||(24041581-24041713)
chr6 (62-115)||(15518074-15518127)
chr6 (140-174)||(15518039-15518073)
chr6 (53-111)||(19973730-19973787)
[»] chr1 (13 HSPs)
chr1 (53-183)||(12141650-12141780)
chr1 (53-174)||(24981160-24981281)
chr1 (53-189)||(4242567-4242703)
chr1 (80-174)||(1953686-1953780)
chr1 (56-136)||(9111542-9111622)
chr1 (54-174)||(47580393-47580515)
chr1 (57-178)||(43254110-43254230)
chr1 (105-174)||(51465493-51465562)
chr1 (57-152)||(38825479-38825575)
chr1 (22-138)||(49387574-49387689)
chr1 (96-182)||(39197203-39197290)
chr1 (57-152)||(38828689-38828785)
chr1 (57-129)||(21501252-21501323)
[»] scaffold0014 (1 HSPs)
scaffold0014 (55-170)||(82624-82739)
[»] chr5 (5 HSPs)
chr5 (53-174)||(18594813-18594934)
chr5 (53-170)||(26703015-26703133)
chr5 (53-170)||(26972748-26972866)
chr5 (53-151)||(39292120-39292218)
chr5 (89-178)||(13291948-13292037)
[»] scaffold0028 (2 HSPs)
scaffold0028 (57-186)||(110108-110236)
scaffold0028 (53-186)||(127687-127819)
[»] scaffold0076 (1 HSPs)
scaffold0076 (39-178)||(6745-6882)
[»] chr3 (7 HSPs)
chr3 (73-174)||(11634188-11634290)
chr3 (57-129)||(42253564-42253635)
chr3 (53-152)||(9372210-9372309)
chr3 (57-138)||(19930038-19930118)
chr3 (76-178)||(2353191-2353292)
chr3 (158-189)||(16366468-16366499)
chr3 (57-117)||(19935237-19935296)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-61)||(26251-26311)
[»] scaffold0293 (1 HSPs)
scaffold0293 (1-154)||(4871-5024)
[»] scaffold0216 (1 HSPs)
scaffold0216 (94-174)||(12112-12192)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 1788845 - 1789018
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  1788845 caaacacgaaaccatgaaagtgataacctgccaaaaagtaaaccattacataaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctc 1788944  T
Q  101 ataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1788945 ataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 1789018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 17028474 - 17028339
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  17028474 aacctgaggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttcttccccgttatgaatcata 17028375  T
Q  153 accggaggtgacagaacaactcgaatatatacacag 188  Q
    ||||||||||||| |||| ||| |||||||||||||    
T  17028374 accggaggtgacacaacagctcaaatatatacacag 17028339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 17558910 - 17558775
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  17558910 aacctgaggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttcttccccgttatgaatcata 17558811  T
Q  153 accggaggtgacagaacaactcgaatatatacacag 188  Q
    ||||||||||||| |||| ||| |||||||||||||    
T  17558810 accggaggtgacacaacagctcaaatatatacacag 17558775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 39655697 - 39655814
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||    
T  39655697 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcccatgatacaacagttcttctccgttatgaatcata 39655796  T
Q  153 accggaggtgacagaaca 170  Q
    |||||| |||||||||||    
T  39655797 accggatgtgacagaaca 39655814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 21185319 - 21185436
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||    
T  21185319 aacctgaagcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccagcatataatagttcttccccgttatgaatcata 21185418  T
Q  153 accggaggtgacagaaca 170  Q
    ||||||||||||| ||||    
T  21185419 accggaggtgacaaaaca 21185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 38678803 - 38678685
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||||||||||||||||  |||| |||||||||| | ||| ||||||||||||||||||   ||||||||||||||  ||||||||||||||||||    
T  38678803 aacctgaggcgtgacatagtca-tgtctttgaggatttgatccgtctcataagcgcatatccttacaggatacaacagtt--tccccgttatgaatcata 38678707  T
Q  153 accggaggtgacagaacaactc 174  Q
    | ||||||||||||||||||||    
T  38678706 atcggaggtgacagaacaactc 38678685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 38676373 - 38676306
Alignment:
Q  107 gcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  38676373 gcatatcctcccaggatacaacaattcttccccgttatgaatcataatcggaggtgacagaacaactc 38676306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 21347198 - 21347111
Alignment:
Q  86 gattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaact 173  Q
    ||||||| ||||||||||||| |||||||||| | |||||||| |||||| | |||||||||||||||  | ||||||| ||||||||    
T  21347198 gattttatccgcctcataagcacatatcctcccaagatacaactgttctttcacgttatgaatcataaatgaaggtgacggaacaact 21347111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 38676933 - 38676894
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggatttta 92  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  38676933 aacctgaggcgtgacatagtcactgtccttgaggatttta 38676894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 4326700 - 4326793
Alignment:
Q  80 cttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||||||||||| |  ||| |||  || ||||||| |||||||||| || |||||| ||||||||||| ||||| ||| |||||||||||||||    
T  4326700 cttgaggattttatcaaccttatagacgaatatcctgctaggataca-catttcttctccgttatgaatgataacaggatgtgacagaacaactc 4326793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 17088768 - 17088806
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggatttt 91  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  17088768 aacctgaggcgtgacatagtcactgtccttgaggatttt 17088806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 31183816 - 31183750
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggat 123  Q
    |||||||||||||| || ||||  ||||| |||||| || |||||| |||||||||||||| |||||    
T  31183816 tgaggcgtgacataatcactgttattgagtattttatccacctcattagcgcatatcctccaaggat 31183750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 31210021 - 31210209
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  31210021 caaacacaaaaccatgaaagtgataacctgccaagaagtaaaccattacataaacctgaggcgtgacatagtcactgtccttgaggattttatccgcctc 31210120  T
Q  101 ataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactcgaatatatacacagg 189  Q
    ||||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31210121 ataagtgcatatcctcccggggtacaacagttcttccccgttatgaatcataatcggaggtgacagaacaactcgaatatatacacagg 31210209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 31206624 - 31206760
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  31206624 aacctgaggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcctggcaggatacaacagttcttccccgttatgaatcata 31206723  T
Q  153 accggaggtgacagaacaactcgaatatatacacagg 189  Q
    || ||||||||||||||||||||||||||||||||||    
T  31206724 actggaggtgacagaacaactcgaatatatacacagg 31206760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 11674118 - 11674000
Alignment:
Q  55 cctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataac 154  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||     
T  11674118 cctgaggtgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttgtt-cccgttatgaatcataat 11674020  T
Q  155 cggaggtgacagaacaactc 174  Q
    ||||||||||||||||||||    
T  11674019 cggaggtgacagaacaactc 11674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 39426452 - 39426570
Alignment:
Q  56 ctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataacc 155  Q
    ||||||||||| |||||| |||||||||||||||||| ||| |||||||||| ||||||||| | |||| ||||||||||||| ||||||||||||||||    
T  39426452 ctgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcccaagataaaacagttcttccctgttatgaatcataacc 39426551  T
Q  156 ggaggtgacagaacaactc 174  Q
    |||||||||||||||||||    
T  39426552 ggaggtgacagaacaactc 39426570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 3850540 - 3850659
Alignment:
Q  56 ctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcataac 154  Q
    |||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||| |    
T  3850540 ctgaggcgtgacatagtcactgtccttgatgattttatacgcctcataagcgcatatcctcctatgatacaacgagttcttcctcggtatgaatcatacc 3850639  T
Q  155 cggaggtgacagaacaactc 174  Q
    | ||||||| ||||||||||    
T  3850640 cagaggtgatagaacaactc 3850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 22301149 - 22301224
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac 128  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  22301149 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagatacaac 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 15569685 - 15569561
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcat 151  Q
    |||||||||||||||| |||| ||||||||  |||||| | ||||||||||||| |||||||||| ||||||||||| ||||||| | | ||||||||||    
T  15569685 aacctgaggcgtgacaaagtcactgtccttagggattt-atccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatcat 15569587  T
Q  152 aaccggaggtgacagaacaactcgaat 178  Q
     | | ||||||||||||||||||||||    
T  15569586 -atcagaggtgacagaacaactcgaat 15569561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 13815887 - 13815772
Alignment:
Q  22 gataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctagg 121  Q
    |||||||||| ||  ||||| |||||| |||| | |||||||||||| |||| |||||||| ||||||| |  ||||||||||||||||||| ||| |||    
T  13815887 gataacctgccaaacagtaatccattatataa-catgaggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcttcccagg 13815790  T
Q  122 atacaaca-gttcttccc 138  Q
    |||||||| |||||||||    
T  13815789 atacaacatgttcttccc 13815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 32352432 - 32352502
Alignment:
Q  58 gaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca 129  Q
    ||||||||||| |||| |||||||| ||||||| |  ||||||||||||||||||||||| |||| ||||||    
T  32352432 gaggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccaggacacaaca 32352502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 2609600 - 2609724
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcat 151  Q
    |||||||||||||||  |||| || ||||| || |||| | | | |||||||||||||||||||  ||||||||||| ||||||| | | ||||||||||    
T  2609600 aacctgaggcgtgacgaagtcactatccttaagtattt-atctgtctcataagcgcatatcctcgcaggatacaacatgttcttctctgatatgaatcat 2609698  T
Q  152 aaccggaggtgacagaacaactcgaat 178  Q
     | | || |||||||||||||||||||    
T  2609699 -atcagatgtgacagaacaactcgaat 2609724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 5434870 - 5434980
Alignment:
Q  64 tgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacag-ttcttccccgttatgaatcataaccggaggtg 162  Q
    ||||||||||  |||| |||| ||||||  || |||||||||||||||| ||   ||||||||| || ||||||||||||| |||||||||   ||| ||    
T  5434870 tgacatagtcgttgtctttgatgattttttccacctcataagcgcatattctgtcaggatacaagaggttcttccccgttaagaatcataaatagagatg 5434969  T
Q  163 acagaacaact 173  Q
    |||||||||||    
T  5434970 acagaacaact 5434980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 6667665 - 6667846
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    |||||||||||  |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  6667665 caaacacgaaactatgaaagtgataacctaccaagaaataaaccattacataaacctgaggcgtgacatagtcactgttcttgaggattttatccgcctc 6667764  T
Q  101 ataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactcgaatatat 182  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6667765 ataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacagctcaaatatat 6667846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 6671337 - 6671512
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||     
T  6671337 caaacacgaaaccatgaaagtgataacctaccaagaaataaaccattacataaacctgaggcgtgacatagtcaccgtccttgaggattttatccgcct- 6671435  T
Q  101 ataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactcgaatatat 182  Q
         |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6671436 -----cgcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacagctcaaatatat 6671512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 44643571 - 44643436
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44643571 aacctgaggcgtgacatagtcactgtccttcag-attctatccgcctcataagcgcatatcctcctaggatacaacagttcttccccgatatgaatcata 44643473  T
Q  153 accggaggtgacagaacaactcgaatatatacacagg 189  Q
    ||| ||| |||||||||||||||||||||||||||||    
T  44643472 accagagatgacagaacaactcgaatatatacacagg 44643436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 13010531 - 13010659
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  13010531 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcctaggatataacagttcttctccgttacgaatcata 13010630  T
Q  153 accggaggtgacagaacaactcgaatatat 182  Q
    | |||| ||||||||||||||| |||||||    
T  13010631 a-cggatgtgacagaacaactcaaatatat 13010659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 895562 - 895463
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||   |||||||||||    
T  895562 aacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaaagttcttccctaatatgaatcata 895463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 20058101 - 20058177
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca 129  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||| | | |||||||||    
T  20058101 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcgtatccttccacgatacaaca 20058177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 31767450 - 31767570
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataacc 155  Q
    |||||||||||| | || || ||||| ||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||  | |    
T  31767450 tgaggcgtgacaaaatcactatccttaaggattt-atccgcctcataagcacatatcctcctaggatacaacatgttcttccctgatatgaatca-catc 31767547  T
Q  156 ggaggtgacagaacaactcgaat 178  Q
     ||||||||||||||||| ||||    
T  31767548 agaggtgacagaacaacttgaat 31767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 43287964 - 43287892
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca 129  Q
    |||||||||||| |||| |||||||| | |  ||||  ||||||||||||||||||| | | |||||||||||    
T  43287964 tgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataagcgcatatctttccaggatacaaca 43287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 2590620 - 2590499
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2590620 aacctgaggcgtgacatagtcactgtccttgaggattttattcgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcata 2590521  T
Q  153 accggaggtgacagaacaactc 174  Q
    ||||||||||||||||||||||    
T  2590520 accggaggtgacagaacaactc 2590499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 21189521 - 21189400
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  21189521 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctccccggatacaacagttattccccgttatgaatcata 21189422  T
Q  153 accggaggtgacagaacaactc 174  Q
    || |||||||||||||||||||    
T  21189421 actggaggtgacagaacaactc 21189400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 18739113 - 18739234
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccg 156  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||| ||    
T  18739113 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccacaatacaacggttcttccccgttatgaatcataatcg 18739212  T
Q  157 gaggtgacagaacaactcgaat 178  Q
    |||||||||||||| |||||||    
T  18739213 gaggtgacagaacagctcgaat 18739234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 14433597 - 14433719
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcat 151  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||  || ||| ||| | ||||||||| ||||||||||||||||||||||    
T  14433597 aacctgaggcgtgacatagtcactgtccttgtggattttatccgcctcataagtacacatcttcccaagatacaacatgttcttccccgttatgaatcat 14433696  T
Q  152 aaccggaggtgacagaacaactc 174  Q
    ||||  ||||||||||| |||||    
T  14433697 aaccaaaggtgacagaataactc 14433719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 35969274 - 35969392
Alignment:
Q  52 aaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcat 151  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||   ||  | | || ||||||||||||||||||||||||||    
T  35969274 aaacctgaggcgtgacatagtcactgtccttgaagattttatccgcctcaaaagcgcata---tcacatgtta-aacagttcttccccgttatgaatcat 35969369  T
Q  152 aaccggaggtgacagaacaactc 174  Q
    ||| |||||| ||||||||||||    
T  35969370 aacaggaggtaacagaacaactc 35969392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 1043242 - 1043148
Alignment:
Q  75 ctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaaca 170  Q
    |||||||||||||||||| ||| |||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| ||||||||||||    
T  1043242 ctgtccttgaggattttatccgtctcataggcgcatatcctcccaggatacaaccgttctt-cccgttatgaatcataatcgggggtgacagaaca 1043148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 8424634 - 8424484
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||| ||| ||||||||||||||||||| ||  |||||||||||||||||||||||| ||||| |   || ||||| || |||| || | | |||||    
T  8424634 caaacactaaaccatgaaagtgataacctgcaaaacagtaaaccattacataaacctgagacgtgataggatcactgtcgttaagga-ttcatctgcctc 8424536  T
Q  101 ataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcat 151  Q
    |||||| ||| | ||| |||||||||||| ||||||| | | ||||||||||    
T  8424535 ataagcacattttctcttaggatacaacatgttcttctctgatatgaatcat 8424484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 27083092 - 27083173
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccc 138  Q
    |||||| ||||| |||| |||||||  ||||||| | |||||||| ||||||||||||||| ||||||||||| |||||||||    
T  27083092 tgaggcatgacaaagtcgctgtcctgaaggattt-atccgcctcacaagcgcatatcctcccaggatacaacaggttcttccc 27083173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 10941428 - 10941486
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcc 117  Q
    |||||||||||| |||| |||||||| ||||||| |  |||||||||||||||||||||||    
T  10941428 tgaggcgtgaca-agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 10941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 10947297 - 10947355
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcc 117  Q
    |||||||||||| |||| |||||||| ||||||| |  |||||||||||||||||||||||    
T  10947297 tgaggcgtgaca-agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 10947355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 4e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 19697846 - 19697964
Alignment:
Q  56 ctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataacc 155  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  19697846 ctgaggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataatc 19697945  T
Q  156 ggaggtgacagaacaactc 174  Q
    |||||||||||||||||||    
T  19697946 ggaggtgacagaacaactc 19697964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 6591847 - 6591938
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttat 144  Q
    ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||    
T  6591847 aacctgaggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatgcaacagttcttctccgttat 6591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 24044901 - 24045016
Alignment:
Q  22 gataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctagg 121  Q
    |||||||||| ||  ||||| |||||| |||| | |||||||||||| |||| |||||||| ||||||| |  ||||||||||||||||||||||| |||    
T  24044901 gataacctgccaaacagtaatccattatataa-catgaggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccagg 24044998  T
Q  122 atacaaca-gttcttccc 138  Q
    |||||||| |||||||||    
T  24044999 atacaacatgttcttccc 24045016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 3835606 - 3835782
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||||||| ||||| ||||||||||||| ||  ||||||||||| ||||||| ||||| |||| |   || | |||||| |||| ||||  | ||||    
T  3835606 caaacacgaaaccatgagagtgataacctgcaaaacagtaaaccattgcataaacatgaggtgtgataagatcaccgtccttaagga-tttattcacctc 3835704  T
Q  101 ataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcataaccggaggtgacagaacaactcgaat 178  Q
    ||||||||||||||||  |||||||||| | |||||| | | ||| |||||| | | ||||||||||||||||| ||||    
T  3835705 ataagcgcatatcctctcaggatacaacaaattcttctctgatataaatcat-atcagaggtgacagaacaacttgaat 3835782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 24041581 - 24041713
Alignment:
Q  6 acgaaatcatgaaagt-gataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataa 104  Q
    |||||| ||||||||  |||||||||| ||  ||||| |||||| |||| | | |||||||||| |||| ||||| || || |||| |  ||||||||||    
T  24041581 acgaaaccatgaaaggagataacctgccaaacagtaatccattatataa-cataaggcgtgacaaagtcactgtctttaagaattt-attcgcctcataa 24041678  T
Q  105 gcgcatatcctcctaggatacaaca-gttcttccc 138  Q
    ||||||||||||||||||||||||| |||||||||    
T  24041679 gcgcatatcctcctaggatacaacatgttcttccc 24041713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 15518127 - 15518074
Alignment:
Q  62 cgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcct 115  Q
    |||||||||||| || |||||||||||| || ||||||||||||||||||||||    
T  15518127 cgtgacatagtcactttccttgaggattatatccgcctcataagcgcatatcct 15518074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 15518073 - 15518039
Alignment:
Q  140 gttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||| |||||||||||||||||||||||||||||    
T  15518073 gttataaatcataaccggaggtgacagaacaactc 15518039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 19973787 - 19973730
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcata 111  Q
    |||||||||||||||| |||| |||||||| | || |||| ||||||||||||||||||    
T  19973787 aacctgaggcgtgacaaagtcactgtccttaaaga-tttatccgcctcataagcgcata 19973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 12141650 - 12141780
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  12141650 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacaattattccccgttatgaatcata 12141749  T
Q  153 accggaggtgacagaacaactcgaatatata 183  Q
    ||  |||||||||||||||||| ||| ||||    
T  12141750 actagaggtgacagaacaactcaaatttata 12141780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 24981160 - 24981281
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||||||||||||||||   |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  24981160 aacctgaggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcccaggatacaacagttcttccccgttatgaatcata 24981259  T
Q  153 accggaggtgacagaacaactc 174  Q
    ||||||| ||| ||||||||||    
T  24981260 accggagatgatagaacaactc 24981281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 4242567 - 4242703
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    |||||||| ||||||||| ||  ||||||||||||||||| ||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  4242567 aacctgagacgtgacataatcgttgtccttgaggattttatccgactcatgagcgcatatcctcccaggatacaactgttcttccccgttatgaatcata 4242666  T
Q  153 accggaggtgacagaacaactcgaatatatacacagg 189  Q
    | || |||||||||||||||||||||||| |||||||    
T  4242667 atcgaaggtgacagaacaactcgaatataaacacagg 4242703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 1953780 - 1953686
Alignment:
Q  80 cttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  1953780 cttgaggattttatctgcctcataagcgaatatcctcccaggatacaacagttcttccctgttatgaatcataacgggaggtgacagaacaactc 1953686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 9111542 - 9111622
Alignment:
Q  56 ctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttc 136  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  9111542 ctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggatacaacagttcttc 9111622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 47580515 - 47580393
Alignment:
Q  54 acctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctc--ctaggatacaacagttcttccccgttatgaatcat 151  Q
    ||||||||||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||||  | |||||||||||| ||||||||||||||||||||    
T  47580515 acctgaggcgtgacatagtcaatgtccttgaagattttatctgcctcataagcgaatatcctccaccaggatacaacaggtcttccccgttatgaatcat 47580416  T
Q  152 aaccggaggtgacagaacaactc 174  Q
    ||||  || |||||||| |||||    
T  47580415 aaccaaagatgacagaagaactc 47580393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 43254230 - 43254110
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataacc 155  Q
    |||||||||||| |||| |||||||| ||||||| |  ||||||||||||||||||||||| ||||||||||| |||||||||   |||||||||| | |    
T  43254230 tgaggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatcat-atc 43254133  T
Q  156 ggaggtgacagaacaactcgaat 178  Q
     ||||||||||||||||| ||||    
T  43254132 agaggtgacagaacaacttgaat 43254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 51465562 - 51465493
Alignment:
Q  105 gcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    |||||||| || | ||||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||    
T  51465562 gcgcatattcttccaggatacaacagttctttcccgttatgaatcatactcggaggttacagaacaactc 51465493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 38825479 - 38825575
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcata 152  Q
    ||||| |||||  |||| |||||||| ||||||||| || |||||||| |||||||||||| |||||||||| |||||||| | | |||||||||||    
T  38825479 tgaggtgtgacgaagtcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaacaagttcttctctgctatgaatcata 38825575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 49387574 - 49387689
Alignment:
Q  22 gataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctagg 121  Q
    |||||||||| ||  ||||| |||||| |||| | |||||||||||| |||| ||| |||| ||||||| |  ||||| ||||||||||||||||| |||    
T  49387574 gataacctgccaaacagtaatccattatataa-catgaggcgtgacaaagtcactggccttaaggattt-attcgccttataagcgcatatcctcccagg 49387671  T
Q  122 atacaaca-gttcttccc 138  Q
    |||||||| |||||||||    
T  49387672 atacaacatgttcttccc 49387689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 39197290 - 39197203
Alignment:
Q  96 gcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcataaccggaggtgacagaacaactcgaatatat 182  Q
    |||||||||||||||||||| | |||||||||| ||| | || ||  |||||||||||  || ||||||||||||||||| |||||||    
T  39197290 gcctcataagcgcatatcctaccaggatacaacaagtccctctccaatatgaatcatagtcgaaggtgacagaacaactcaaatatat 39197203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 38828689 - 38828785
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcata 152  Q
    |||||||||||  |||| || ||||| ||||||||| |||||| |||||| |||||| ||| |||||| ||| ||||||||||   |||||||||||    
T  38828689 tgaggcgtgacgaagtcactatccttaaggattttatccgccttataagctcatatcttcccaggataaaacaagttcttccctactatgaatcata 38828785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 21501252 - 21501323
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca 129  Q
    |||||||||||| |||| || || || ||||||| | ||| |||||||| | |||||||||||||||||||||    
T  21501252 tgaggcgtgacaaagtcgctatctttaaggattt-atccgtctcataagtgtatatcctcctaggatacaaca 21501323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 82739 - 82624
Alignment:
Q  55 cctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataac 154  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |    
T  82739 cctgaggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttataaatcatagc 82640  T
Q  155 cggaggtgacagaaca 170  Q
    |||| |||||||||||    
T  82639 cggatgtgacagaaca 82624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 18594934 - 18594813
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  18594934 aacctgaggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatattctcacaggatacaacagttcttccccgttatgaatcata 18594835  T
Q  153 accggaggtgacagaacaactc 174  Q
    || | |||||||||||||||||    
T  18594834 actgaaggtgacagaacaactc 18594813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 26703015 - 26703133
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcat 151  Q
    ||||||| ||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||| | | |||||||||     
T  26703015 aacctgatgcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatcaa 26703114  T
Q  152 aaccggaggtgacagaaca 170  Q
    |||||||||||||||||||    
T  26703115 aaccggaggtgacagaaca 26703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 26972748 - 26972866
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcat 151  Q
    ||||||| ||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||| | | |||||||||     
T  26972748 aacctgatgcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatcaa 26972847  T
Q  152 aaccggaggtgacagaaca 170  Q
    |||||||||||||||||||    
T  26972848 aaccggaggtgacagaaca 26972866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 39292218 - 39292120
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcat 151  Q
    ||||||||| |||| |||||| |||||||| ||||||||| |||||||||||||||||||||| | || ||||||||||||||| ||||||||||||||    
T  39292218 aacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatccttccagaatacaacagttcttctccgttatgaatcat 39292120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 13292037 - 13291948
Alignment:
Q  89 tttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataaccggaggtgacagaacaactcgaat 178  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||| ||| | | |||||||||| | | ||||||| ||||||||||||||    
T  13292037 tttatccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcat-atcagaggtgatagaacaactcgaat 13291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 110236 - 110108
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcataaccg 156  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||| | | ||||||||||   |     
T  110236 tgaggcgtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacagttcttcgctgatatgaatcat-gtca 110138  T
Q  157 gaggtgacagaacaactcgaatatatacac 186  Q
    ||||||||||||||||||||||||||||||    
T  110137 gaggtgacagaacaactcgaatatatacac 110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 127819 - 127687
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccccgttatgaatcata 152  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||| | |||||||||||||||||| | ||||||||||     
T  127819 aacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaacagttcttccctgatatgaatcat- 127721  T
Q  153 accggaggtgacagaacaactcgaatatatacac 186  Q
      | |||||||||||||||||||||| |||||||    
T  127720 gtcagaggtgacagaacaactcgaatgtatacac 127687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 6745 - 6882
Alignment:
Q  39 taaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaacagttcttccc 138  Q
    ||||||||||  ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||| | | |||||||||||| |||||    
T  6745 taaaccattatctaaac-tgaggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccatgatacaacagtttttccc 6843  T
Q  139 cgttatgaatcataaccggaggtgacagaacaactcgaat 178  Q
     | |||||||||| | | ||| ||||||||||||| ||||    
T  6844 tgatatgaatcat-atcagagatgacagaacaacttgaat 6882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 11634188 - 11634290
Alignment:
Q  73 ctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataaccggaggtgacagaacaa 171  Q
    |||||| ||||||||||||| || |||| ||| |||||||||||| ||||||||||| || |||||||||||||||||||||| | |||| ||| |||||    
T  11634188 ctctgttcttgaggattttatccacctcgtaaacgcatatcctcccaggatacaacatgtccttccccgttatgaatcataactgcaggtaacacaacaa 11634287  T
Q  172 ctc 174  Q
    |||    
T  11634288 ctc 11634290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 42253564 - 42253635
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca 129  Q
    |||||||||||| |||| |||||||| ||||||| | |||||||||||||||||||||||| |||||||||||    
T  42253564 tgaggcgtgacaaagtcactgtccttaaggattt-acccgcctcataagcgcatatcctccaaggatacaaca 42253635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 9372210 - 9372309
Alignment:
Q  53 aacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcat 151  Q
    |||||||||| ||||  |||| |||||||| ||||||| |  ||||||||||||||||||| ||| ||||||||||| |||| |||| | ||||||||||    
T  9372210 aacctgaggcatgacgaagtcactgtccttaaggattt-attcgcctcataagcgcatatcgtcccaggatacaacaggttcatccctgatatgaatcat 9372308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 19930038 - 19930118
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccc 138  Q
    |||||||||||| |||| | |||||| ||||||| | |||||||||||||||||||||||| | ||||||||| |||||||||    
T  19930038 tgaggcgtgacaaagtcaccgtccttaaggattt-atccgcctcataagcgcatatcctccca-gatacaacatgttcttccc 19930118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 2353292 - 2353191
Alignment:
Q  76 tgtccttgaggattttaaccgcctcataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    ||||||| ||||||| | |||||||||||| || |||||||| ||||||||||| ||||||| | | |||||||||| |   |||||||||||||||||     
T  2353292 tgtccttaaggattt-atccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcat-ataagaggtgacagaacaactt 2353195  T
Q  175 gaat 178  Q
    ||||    
T  2353194 gaat 2353191  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 189
Target Start/End: Original strand, 16366468 - 16366499
Alignment:
Q  158 aggtgacagaacaactcgaatatatacacagg 189  Q
    ||||||||||||||||||||||||||||||||    
T  16366468 aggtgacagaacaactcgaatatatacacagg 16366499  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 19935237 - 19935296
Alignment:
Q  57 tgaggcgtgacatagtctctgtccttgaggattttaaccgcctcataagcgcatatcctcc 117  Q
    |||||||||||| |||| |||||||| |||| |||| || |||||||||||||||| ||||    
T  19935237 tgaggcgtgacaaagtcactgtccttaagga-tttatcctcctcataagcgcatattctcc 19935296  T

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Target: scaffold0007 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26251 - 26311
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgagg 61  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26251 caaatacgaaaccatgaaagtgataacctgccaagaagtaaaccattacataaacctgagg 26311  T

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Target: scaffold0293 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 4871 - 5024
Alignment:
Q  1 caaacacgaaatcatgaaagtgataacctgcgaagaagtaaaccattacataaacctgaggcgtgacatagtctctgtccttgaggattttaaccgcctc 100  Q
    ||||||||||| ||||| ||||||||||||| ||  ||||||||||||||||||||| |||| ||| |   || |||| ||| |||| |||| | |||||    
T  4871 caaacacgaaaccatgagagtgataacctgcaaaacagtaaaccattacataaaccttaggcatgataggatcactgttcttaagga-tttatctgcctc 4969  T
Q  101 ataagcgcatatcctcctaggatacaaca-gttcttccccgttatgaatcataac 154  Q
    |||||| |||||||||| | ||||||||| |||||||   | |||||||||||||    
T  4970 ataagcacatatcctcccaagatacaacaggttcttctatgatatgaatcataac 5024  T

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Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 12192 - 12112
Alignment:
Q  94 ccgcctcataagcgcatatcctcctaggatacaac-agttcttccccgttatgaatcataaccggaggtgacagaacaactc 174  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||   |||||||||| | | ||||||||||||||||||    
T  12192 ccgcctcacaagcgcatatcatcctaggatacaacaagttcttcccttatatgaatcat-atcagaggtgacagaacaactc 12112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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