View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_103 (Length: 324)
Name: NF8908_low_103
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 3480882 - 3480592
Alignment:
| Q |
20 |
attcatgcaatttgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatcccaattc |
119 |
Q |
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| T |
3480882 |
attcatgcaattcgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatcccaattc |
3480783 |
T |
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| Q |
120 |
aatttgctgaatctcatggaattgagagttgtgaatctcgttgaatcgtatgatatgaattcagtcatgtacatgggtacatcccagagacagacctagt |
219 |
Q |
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| T |
3480782 |
aatttgctgaatctcatggaattgggagttgtgaatctcgttgaatcgtatgatatgaattcagtcatgttcatgggtacatcccagatacagacctagt |
3480683 |
T |
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| Q |
220 |
tgtgtgacttggtttctaaatgtttttgcatacatgtcatttgtttttacaatgcataacaagatcacgattcagaaaataggtcttccga |
310 |
Q |
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| T |
3480682 |
tgtgtgacttggtttctaaatgtttttgcatacatgtcatttgtttttacaatgcataacaagatcacgattcagaaaataggtcttccga |
3480592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 3523866 - 3523635
Alignment:
| Q |
15 |
tcacgattcatgcaatttgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatccc |
114 |
Q |
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|||||||||||| ||| ||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||||||| |
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| T |
3523866 |
tcacgattcatgtgattaacatcttgatttgatacgatatcaaacacaattgatacatatcagagtgtgaatctcttttggacttctcatcatgaatccc |
3523767 |
T |
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| Q |
115 |
aattcaatttgctgaatctcatggaattgagagttgtgaatctc-gttgaatcgtatgatatgaattcagtcatgtacatgggtacatcccagagacaga |
213 |
Q |
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| T |
3523766 |
aattcaatttgctgaatctcatggagttgggagatgtgaatctcagttaaatcacatgatatgaattcaatcatg---gtgggtacatcccagaaactgg |
3523670 |
T |
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| Q |
214 |
cctagttgtgtgacttggtttctaaatgtttttgc |
248 |
Q |
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| T |
3523669 |
ccgagttggacgacttggtttctaaatgtttttgc |
3523635 |
T |
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