View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_107 (Length: 310)
Name: NF8908_low_107
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 12519985 - 12520278
Alignment:
| Q |
1 |
aggattgcgatatctcgggcgatcgtgaagaatccatcgatccttttattagatgaagcaactagtgctttggatgcggagtctgagaagagtgtacagg |
100 |
Q |
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| T |
12519985 |
aggattgcgatatctcgggcgatcgtgaagaatccatcgatccttttattagatgaagcaactagtgctttggatgcggagtctgagaagagtgtacagg |
12520084 |
T |
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| Q |
101 |
aggctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagatgttatagctgttgttcaaggagg |
200 |
Q |
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| T |
12520085 |
aggctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagatgttatagctgttgttcaaggagg |
12520184 |
T |
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| Q |
201 |
gaggattgtggagaccggtaaccatgaaaaactcatgtccaatccaactagtgtttatgcatctcttgttcaactccaaggagcaagttctttg |
294 |
Q |
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| T |
12520185 |
gaggattgtggagaccggtaaccatgaaaaactcatgtccaatccaactagtgtttatgcatctcttgttcaactccaaggagcaagttctttg |
12520278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 27727433 - 27727702
Alignment:
| Q |
4 |
attgcgatatctcgggcgatcgtgaagaatccatcgatccttttattagatgaagcaactagtgctttggatgcggagtctgagaagagtgtacaggagg |
103 |
Q |
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| T |
27727433 |
attgcaatatctcgtgctatagttaaaaatccatcaatccttttattagatgaagcaactagtgctttggatgccgagtctgagaaaagtgtacaagaag |
27727532 |
T |
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| Q |
104 |
ctctcgatcgtgtcatggttggaagaacaacaattgtagttgcacacagactttctaccattaggaatgcagatgttatagctgttgttcaaggagggag |
203 |
Q |
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| T |
27727533 |
ctcttgatcatgtcatgattggtagaacaactgtgatagttgcacacagactttctaccattaagaatgcagatatgatagctgttgttgaaggagggag |
27727632 |
T |
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| Q |
204 |
gattgtggagaccggtaaccatgaaaaactcatgtccaatccaactagtgtttatgcatctcttgttcaa |
273 |
Q |
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| T |
27727633 |
cgttgtggaaactggaaatcacgaggagctcatttccaatccaaatagtttatattcatctcttgttcaa |
27727702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 27625194 - 27625122
Alignment:
| Q |
140 |
tagttgcacacagactttctaccattaggaatgcagatgttatagctgttgttcaaggagggaggattgtgga |
212 |
Q |
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| T |
27625194 |
tagtggcacacagactttctacaattaggaatgcagatatgatagctattgttgaaggagggagcattgtgga |
27625122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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