View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_low_108 (Length: 308)

Name: NF8908_low_108
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_low_108
NF8908_low_108
[»] chr6 (9 HSPs)
chr6 (50-301)||(6523338-6523587)
chr6 (71-213)||(6526403-6526545)
chr6 (59-216)||(6465361-6465518)
chr6 (71-123)||(1841894-1841946)
chr6 (116-216)||(6528221-6528321)
chr6 (71-197)||(6505527-6505653)
chr6 (5-57)||(6520497-6520549)
chr6 (96-125)||(1831843-1831872)
chr6 (32-60)||(6526565-6526593)
[»] chr1 (2 HSPs)
chr1 (25-224)||(35231392-35231591)
chr1 (25-196)||(35243032-35243203)
[»] chr7 (1 HSPs)
chr7 (147-215)||(9665386-9665454)
[»] chr4 (1 HSPs)
chr4 (147-215)||(13536410-13536478)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 6523587 - 6523338
Alignment:
Q  50 ttgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttg 149  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6523587 ttgattgcaaggttggcttcaatagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggcttg 6523488  T
Q  150 atggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaaggatgttctgctgactctagttctgattcttgttc 249  Q
    |||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||      
T  6523487 atggaactttcaaataaaatggatttctatatgatcagaaatggggagatattgttaccaaacaaagatgttctgctgactctagttctgattttggt-- 6523390  T
Q  250 ttagtcttattgttctcagcttcatcgctagggatatttcctttatggtatt 301  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523389 tgagtcttattgttctcagcttcatcgctagggatatttcctttatggtatt 6523338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 6526545 - 6526403
Alignment:
Q  71 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatg 170  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| || | |||||||| |||||||||||||||  | || | |||||    
T  6526545 atagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatg 6526446  T
Q  171 aatttctatatgatcagaaatggggagatattgttaccaaaca 213  Q
     |||||| |||||| | ||||||||||||||||| ||||||||    
T  6526445 gatttctttatgataaaaaatggggagatattgtaaccaaaca 6526403  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 6465518 - 6465361
Alignment:
Q  59 aggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaa 158  Q
    ||||||||||  || |||||||||||||||||||| ||||||||| | ||| |||| |||| |||||| || |  ||||||| |||||||||||||||      
T  6465518 aggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattaggaagtttttgaaggaaactattgagccttggcttgatggaactt 6465419  T
Q  159 tcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaagg 216  Q
    | || | ||||| |||||| ||||||   ||||||||||  |||||||||||||||||    
T  6465418 ttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaacaagg 6465361  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 1841894 - 1841946
Alignment:
Q  71 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtattt 123  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  1841894 atagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 1841946  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 6528321 - 6528221
Alignment:
Q  116 aagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaag 215  Q
    ||||||||||| ||||| ||||||| |||||||||||||||  ||||||  |||| |||||| |||||| | ||||||||||  ||| |||| |||||||    
T  6528321 aagtatttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagggattattacaaaacaag 6528222  T
Q  216 g 216  Q
    |    
T  6528221 g 6528221  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 6505653 - 6505527
Alignment:
Q  71 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatg 170  Q
    ||||||||||||||||  ||| | ||||  |||  |||||| ||||| | |||||| || | |||||||| |||||||||||||||  | || | |||||    
T  6505653 atagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatg 6505554  T
Q  171 aatttctatatgatcagaaatggggag 197  Q
     ||||||||||||| | ||||||||||    
T  6505553 gatttctatatgataaaaaatggggag 6505527  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 6520497 - 6520549
Alignment:
Q  5 aattcatcagatatagcaacgacttcgtcttatttttatggaaaattgattgc 57  Q
    ||||||||||||||| |||| || |||||||||| ||||||||| ||||||||    
T  6520497 aattcatcagatatatcaacaacatcgtcttattcttatggaaagttgattgc 6520549  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 125
Target Start/End: Original strand, 1831843 - 1831872
Alignment:
Q  96 atgtgatttcaaaagttagaaagtatttga 125  Q
    ||||||||||||||||||||||||||||||    
T  1831843 atgtgatttcaaaagttagaaagtatttga 1831872  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 6526593 - 6526565
Alignment:
Q  32 tcttatttttatggaaaattgattgcaag 60  Q
    |||||||||||||||||||||||||||||    
T  6526593 tcttatttttatggaaaattgattgcaag 6526565  T

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Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 35231392 - 35231591
Alignment:
Q  25 gacttcgtcttatttttatggaaaattgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttg 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||  |||||||||    
T  35231392 gacttcatcttatttttatggaaaattgattgcaaggttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttg 35231491  T
Q  125 aaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaaggatgttctg 224  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||   ||||||| ||||||||||||||||    
T  35231492 aaagagatcattgagccttggcttgatggagctatcaaagaaaatggatttctatatgatcaggaatggagagtagttgttacaaaacaaggatgttctg 35231591  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 35243032 - 35243203
Alignment:
Q  25 gacttcgtcttatttttatggaaaattgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttg 124  Q
    |||||| |||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||| | ||||||||| |||||||||  |||||||||    
T  35243032 gacttcatcttatttttatggaaaattgattgcatagttggctttgatagctgaagaggtttgtttctttgatgtgattccaaaagttaagaagtatttg 35243131  T
Q  125 aaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatgggga 196  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||||    
T  35243132 aaagaggtcattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatgggga 35243203  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 9665386 - 9665454
Alignment:
Q  147 ttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaag 215  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||||||  ||||| ||||||||||    
T  9665386 ttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaattgtaaccaaacaag 9665454  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 13536410 - 13536478
Alignment:
Q  147 ttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaag 215  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||||||  ||||| ||||||||||    
T  13536410 ttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaattgtaaccaaacaag 13536478  T

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