View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_115 (Length: 296)
Name: NF8908_low_115
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_115 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 45678829 - 45678641
Alignment:
| Q |
25 |
aaaaatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagaaaactgtacatacacgagcccaaatattacggat |
124 |
Q |
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| T |
45678829 |
aaaaatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagcaaactgtacatacacgagcccaaatattacggat |
45678730 |
T |
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| Q |
125 |
caaagacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtggatgt |
213 |
Q |
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| T |
45678729 |
caaagacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtgtatgt |
45678641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 45678650 - 45678607
Alignment:
| Q |
234 |
acgtgtatgttctaatccttggagtatgttgcaattgattgatt |
277 |
Q |
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| T |
45678650 |
acgtgtatgttctgatccttggagtatgttgcaattgattgatt |
45678607 |
T |
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