View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_117 (Length: 292)
Name: NF8908_low_117
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_117 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 4766041 - 4766267
Alignment:
| Q |
5 |
gagtccttatgtgataagagctatgcctgctataattaaattatcagctagaacttgattagcagcttctgaaggatgaacactatcccaaaacacatac |
104 |
Q |
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| T |
4766041 |
gagtccttatgtgataagagctatgcctgctataattaaattatcagctagaacttgattagcagcttctgaaggatgaacactatcccaaaacacatac |
4766140 |
T |
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| Q |
105 |
tgagttgcattagaacaagttcctagtgattttggattgcacaacaatgatgttgtttctacaagtcctgtaccacagcaccctttgcctgcctcagcaa |
204 |
Q |
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| T |
4766141 |
tgagttgcattagaacaagttcctagtgattttggattgcacaacaatgatgttgtttctacaagtcctgtaccacagcacccttttcctgcctcagcaa |
4766240 |
T |
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| Q |
205 |
aacctatacagaacatcataagaaaggtt |
233 |
Q |
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| T |
4766241 |
aacc--tacagaacatcatcagaaaggtt |
4766267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 43252392 - 43252237
Alignment:
| Q |
54 |
agaacttgattagcagcttctgaaggatgaacactatcccaaaacacatactgagttgcattagaacaagttcctagtgattttggattgcacaacaatg |
153 |
Q |
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|||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || | |
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| T |
43252392 |
agaatttggttagcagcttctgaaggatggacactgtcccaaaacacatactgagttgcattagaacaagttcctagtgacttttgattgcacaataagg |
43252293 |
T |
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| Q |
154 |
atgttgtttctacaagtcctgtaccacagcaccctttgcctgcctcagcaaaacct |
209 |
Q |
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| T |
43252292 |
atgtcgtctccacaatcccagttccacaacagcctttccttgcctccgcaaaacct |
43252237 |
T |
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