View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_12 (Length: 646)
Name: NF8908_low_12
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 3 - 629
Target Start/End: Original strand, 45603715 - 45604340
Alignment:
| Q |
3 |
ttgcaatgagatggacatcaattttgatcatggtcattacatctattgctcttctaggggctggtttagtcctcacagatgactatattatttcaggatg |
102 |
Q |
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| T |
45603715 |
ttgctatgaaatggacaccaattttgatcatggtcattacatctattgctcttctaggggctggtttagtcctcacagatgactatattatttcaggatg |
45603814 |
T |
|
| Q |
103 |
atgaagcttcaattatggatggatggatttcatgccccactagttacaactttgattttggaaactagtaaaatatatgtagtggcccactgaattccct |
202 |
Q |
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| T |
45603815 |
atgaagcttcaattatggatggat----ttcatgccccactagttacaactttgattttggaaactagtaaa-tatatgtagtggcccattgaattccct |
45603909 |
T |
|
| Q |
203 |
tcccatgcaggccaagcacatcaataatatcccatgaataacatatgaagagtaccatat----agtaattagttcttaatctaaaaatgaaattacatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45603910 |
tcccatgcaggccaagcacatcaataatatcccaggaataacatatgaagagcaccatatatatagtaattagttcttaatctaaaaatgaaattacatg |
45604009 |
T |
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| Q |
299 |
tgtgtgcacaaaagcaactctagcaaaataacaaataatttcatgtgtatatggtaaccctgtggatattgaaatcatttgaatttcgtaggaggaatat |
398 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
45604010 |
tgtgtgcacaaaagcaactctaacaaaataacaaataatttcatgtgtatatggtaaccctgtggaaattgaaatcatttgaatttggtaggaggaatat |
45604109 |
T |
|
| Q |
399 |
agtaaatacaatacatgacatacataattcagtatgtataattcaaagccctcaaacgtacattgcatcattgcttagattgaaattgttacttaaatca |
498 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45604110 |
agtaaatacaatacattacatacataattcagtatgtataattcaaagccctcaaacgtacattgcatcattgcttagattgaaattgttacttaaatca |
45604209 |
T |
|
| Q |
499 |
actccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactat |
598 |
Q |
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| T |
45604210 |
actccaggcatgcaatggacaaacccatttcccacaatttgatttgcaaatttaatctgtgaattgaacatctcagtggctgaaatgttagtcacactat |
45604309 |
T |
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| Q |
599 |
tatgaaactctccattgaagggtccttcttg |
629 |
Q |
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| T |
45604310 |
tatgaaactctccattgaagggtccttcttg |
45604340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 47711707 - 47711795
Alignment:
| Q |
3 |
ttgcaatgagatggacatcaattttgatcatggtcattacatctattgctcttctaggggctggtttagtcctcacagatgactatatt |
91 |
Q |
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|||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
47711707 |
ttgctatgaaatggacaccaattttgatcatggtcattacttctattgctcttctaggggctggcttagttatcagagatgactatatt |
47711795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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