View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_123 (Length: 273)
Name: NF8908_low_123
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_123 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39881540 - 39881279
Alignment:
| Q |
1 |
tgcaaatttcgttgctgcattgaagacttttttcactatccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatcca |
100 |
Q |
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| T |
39881540 |
tgcaaatttcgttgctgcattgaagacttttttcactacccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatcca |
39881441 |
T |
|
| Q |
101 |
tgaacccattttacctataaaacatttttcttgttagccaagttctagaattgtttattaatagcaacttggttccaacattttagatcaatgaaattcc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39881440 |
tgaacccattttacctataaaatatttttcttgttagccaagttctagaattgttttttaatagcaacttggttccaacattttagatcaatgaaattcc |
39881341 |
T |
|
| Q |
201 |
actcactaattgttttaggcaaataaatatactctcaagccacaagagctcttttggaaaca |
262 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39881340 |
actcaccaattgttttaggcaaataaatatactctcaagccacaagagctcttttagaaaca |
39881279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 39876176 - 39876069
Alignment:
| Q |
158 |
ttaatagcaacttggttccaacattttagatcaatgaaattccactcactaattgttttaggcaaataaatatactctcaagccacaagagctcttttgg |
257 |
Q |
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| T |
39876176 |
ttaatagcaacttggttccaacattttagatcaatcaaattccacccaccagttattttaggaatataaatatactcttaagccacaagagctcctttgg |
39876077 |
T |
|
| Q |
258 |
aaacacca |
265 |
Q |
| |
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|||||||| |
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| T |
39876076 |
aaacacca |
39876069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39880104 - 39880034
Alignment:
| Q |
1 |
tgcaaatttcgttgctgcattgaagacttttttcactatccatgaagcttgagtaggaactttaataagta |
71 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39880104 |
tgcaaaattcgttgctgcattgaagacttttttcactacccatgaagcttgagtaggaactttaataagta |
39880034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 5673603 - 5673431
Alignment:
| Q |
29 |
tttttcactatccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatccatgaacccattttacctataaaacatttt |
128 |
Q |
| |
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|||||||||| ||||||| |||| | |||| ||| ||||||||| | || ||||||||||| || ||| |||| |||||||||||| || ||| || | |
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| T |
5673603 |
tttttcacta-ccatgaaacttgggaaggagcttcaataagtagcacattcctcccttttatgtagtattcatgtacccattttacccatgaaatatcct |
5673505 |
T |
|
| Q |
129 |
tcttgttagccaagttctagaattgtttattaatagcaacttggttccaacattttagatcaatgaaattccac |
202 |
Q |
| |
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|||| |||||||||| | |||| ||||| | |||||| |||| ||||||||||| | |||||||| ||||||| |
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| T |
5673504 |
tcttattagccaagtgccagaaatgtttgctgatagcagcttgattccaacatttcaaatcaatgacattccac |
5673431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 13941139 - 13940898
Alignment:
| Q |
23 |
aagacttttttcactatccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatccatgaacccattttacctataaaa |
122 |
Q |
| |
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|||||||||||||||| |||||||||||| | | | ||| ||||||||| | |||||||||||||| || ||| |||| ||| |||||||| |||||| |
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| T |
13941139 |
aagacttttttcactacccatgaagcttgggaaaaagcttcaataagtagcacatttctcccttttatgtagtattcatgtacctattttacccataaaa |
13941040 |
T |
|
| Q |
123 |
catttttcttgttagccaagttctagaattgtttattaatagcaacttggttccaacattttagatcaatgaaattccactcactaattgttttaggcaa |
222 |
Q |
| |
|
||| |||||||||||||||||| |||| ||| | | |||||| |||||||||||||||| | |||||||| |||| | ||| | ||| |||||||| |
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| T |
13941039 |
catccttcttgttagccaagttccagaaatgtatgatgatagcagcttggttccaacatttcaaatcaatgacattctatccaccagctgtcttaggcaa |
13940940 |
T |
|
| Q |
223 |
ataaatatactctcaagccacaagagctcttttggaaacacc |
264 |
Q |
| |
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| ||||||| || ||| | ||||||||||||||||||||||| |
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| T |
13940939 |
acaaatatattcccaaacaacaagagctcttttggaaacacc |
13940898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 27180078 - 27180260
Alignment:
| Q |
80 |
ctcccttttatatactatccatgaacccattttacctataaaacatttttcttgttagccaagttctagaattgtttattaatagcaacttggttccaac |
179 |
Q |
| |
|
||||||||||| || ||| |||| |||||||||||| ||||||||| |||||||| ||||||||| | || || || | |||||| |||||||||||| |
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| T |
27180078 |
ctcccttttatgtagtattcatgtacccattttacccataaaacatccttcttgtttgccaagttccataaatgcttgatgatagcagcttggttccaac |
27180177 |
T |
|
| Q |
180 |
attttagatcaatgaaattccactcactaattgttttaggcaaataaatatactctcaagccacaagagctcttttggaaaca |
262 |
Q |
| |
|
|||| | |||||||| |||||| ||| || ||| ||||||||| |||||| ||||||||| ||||||| |||||| |||||| |
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| T |
27180178 |
atttcaaatcaatgacattccatccaccaactgtcttaggcaaacaaatattctctcaagcaacaagagatctttttgaaaca |
27180260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 38670289 - 38670054
Alignment:
| Q |
23 |
aagacttttttcactatccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatccatgaacccattttacctataaaa |
122 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| | |||||||| ||| | || |||||||||||||| || ||| |||||| ||||| | | | |||| |
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| T |
38670289 |
aagacattttttactattcatgaagcttgtggaggaacttcgatagacaacatatttctcccttttatgtagtattcatgaatgcatttaaacca-aaaa |
38670191 |
T |
|
| Q |
123 |
catttttcttgttagccaagttctagaattgtttattaatagcaacttggttccaacattttagatcaatgaaattccactcactaattgttttaggcaa |
222 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | | ||||||||||||| | |||| | |||||||| ||||||| || | ||| ||| | || |
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| T |
38670190 |
tatccttcttgttagccaagttctagaattgtttactcagagcaacttggttcaagtatttcaaatcaatgacattccacccatcacctgtcttatgtaa |
38670091 |
T |
|
| Q |
223 |
ataaatatactctcaagccacaagagctcttttggaa |
259 |
Q |
| |
|
|| ||||||||| ||| | ||| |||||||||||||| |
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|
| T |
38670090 |
atgaatatactcccaaacaacacgagctcttttggaa |
38670054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 38276939 - 38277066
Alignment:
| Q |
23 |
aagacttttttcactatccatgaagcttgagtaggaactttaataagtagtatgtttctcccttttatatactatccatgaacccattttacctataaaa |
122 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||||||| ||||||||||| ||||| ||||| || || || |||||||||||| || |||| | |
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| T |
38276939 |
aagactttttttactatacatgaagcttctgaaggaacttcaataagtagtacatttcttcctttaatgtaatacttatgaacccatttaactcataaca |
38277038 |
T |
|
| Q |
123 |
catttttcttgttagccaagttctagaa |
150 |
Q |
| |
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||| |||| |||||| |||||| |||| |
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|
| T |
38277039 |
catcattctcgttagcgaagttccagaa |
38277066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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