View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_125 (Length: 264)
Name: NF8908_low_125
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_125 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 859613 - 859845
Alignment:
| Q |
18 |
catgggatgtgaagttgtttacttgactatatttttggatcaactctaatacgtttcccaaaatactacaagaaatcaaatgtttaataacatctccata |
117 |
Q |
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| T |
859613 |
catgggatgtgaagttgtttacttgactatatttttggatcaactctaatacgtttcccaaaatactacaagaaatcaaatgtttaataacatctccata |
859712 |
T |
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| Q |
118 |
acacttgtagactatatcaaatagcttgtagaaacacctaataacatcccgataagttgttgtcagtttataaaacttttcaaaattgcttatgaaaatc |
217 |
Q |
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| T |
859713 |
acacttgtagactatatcaaatagcttatagaaacacctaataacatcccgataagttgttgtcagtttataaaacttttcaaaattgcttatgaaaatc |
859812 |
T |
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| Q |
218 |
atatcccaacgacacacagagcagtaaacaccaaa |
252 |
Q |
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| T |
859813 |
atatccctacg--acacagagcagtaaacatcaaa |
859845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 1220890 - 1221122
Alignment:
| Q |
18 |
catgggatgtgaagttgtttacttgactatatttttggatcaactctaatacgtttcccaaaatactacaagaaatcaaatgtttaataacatctccata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220890 |
catgggatgtgaagttgtttacttgactatatttttggatcaactctaatacgtttcccaaaatactacaagaaatcaaatgtttaataacatctccata |
1220989 |
T |
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| Q |
118 |
acacttgtagactatatcaaatagcttgtagaaacacctaataacatcccgataagttgttgtcagtttataaaacttttcaaaattgcttatgaaaatc |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220990 |
acacttgtagactatatcaaatagcttatagaaacacctaataacatcccgataagttgttgtcagtttataaaacttttcaaaattgcttatgaaaatc |
1221089 |
T |
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| Q |
218 |
atatcccaacgacacacagagcagtaaacaccaaa |
252 |
Q |
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||||||| ||| ||||||||||||||||| |||| |
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| T |
1221090 |
atatccctacg--acacagagcagtaaacatcaaa |
1221122 |
T |
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