View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_131 (Length: 254)
Name: NF8908_low_131
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_131 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 26858528 - 26858291
Alignment:
| Q |
17 |
agctacaccatctattcttttctaaagtacattaaacaagccttcatctaaaaactaaacctgaaatattcacacatctcaagttaattaagctatatct |
116 |
Q |
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| T |
26858528 |
agctacaccatctatttttttctaaagtacattaaacataccttcatctaaaaactaaacctgaaatattcacacatatcaagttaactaagctatatct |
26858429 |
T |
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| Q |
117 |
agctacaaggtaccccttgaattgaaagtgactaaaaatttgtctaatcttaattctatgttaacaaattcctatcaaggttatctcaccaccgtctccc |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
26858428 |
tgctacaaggtaccccttgaattgaaagtggctaaaaatttgtctaatcttaattctatgttaacaaattcctatcaaggtcatctcaccgccgtctccc |
26858329 |
T |
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| Q |
217 |
aattttcaccggagagtgtccggtggaaatcctcaccc |
254 |
Q |
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|||||| |||||||||||||||||| |||||||||||| |
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| T |
26858328 |
aattttaaccggagagtgtccggtgtaaatcctcaccc |
26858291 |
T |
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