View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_14 (Length: 604)
Name: NF8908_low_14
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 5 - 461
Target Start/End: Original strand, 54615691 - 54616150
Alignment:
| Q |
5 |
gagatgatgtccttttgcttgcattagaatggtgaagggaataatgagaaattacttagcatgtggtgggtgggg-tgagttgcagcttttaggtcacta |
103 |
Q |
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| T |
54615691 |
gagatgatgtccttttgcttgcattagaatggtgaagggaataatgagaaattacttagcatgtggtgggtgggggtgagttgcagcttttaggtcactt |
54615790 |
T |
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| Q |
104 |
cacttttcctatttaattagtattgcgtaaaatatactttgaaatctttaggttgcattgcaccaaatccatcaatgttgtataaatccaaggtctcgag |
203 |
Q |
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| T |
54615791 |
cacttttcctatttaattagtattgcgtaaaatatactttgaactctttaggttgcattgcaccaaatccatcaatgttgtataaatccaaggtctcgag |
54615890 |
T |
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| Q |
204 |
ttattacaaatgatgttaacagatggtagtcaaccaaaccaccatcttccgtgcggaagttctaaatattaatttaatcaaac--ttttgtgacaaaagt |
301 |
Q |
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| T |
54615891 |
ttattacaaatgatgttaacagatggtagtcaaccaaaccaccatcttctgtgcggaagttctaaatattaatttaatcaaacttttttgtgacaaaagt |
54615990 |
T |
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| Q |
302 |
taatttaatcaaaattagatatattatgcagcacatcagaatataacaatatcgatcaatgtggttctctgtctctctacaaggaaatgtattgtttagg |
401 |
Q |
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| T |
54615991 |
taatttaatcaaaattagatatattatgcagaacatcagaatataacaatatcgatcaatgtggttctctgtctctctacaaggaaatgtattgtttagg |
54616090 |
T |
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| Q |
402 |
atactgttccactttgaaatttgcaaacagttatggttgaatatgagcttttcttagacc |
461 |
Q |
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| T |
54616091 |
atactgttccactttgaaatttgcaaacagttatggttgaatatgagcttttcttagacc |
54616150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 54616226 - 54616281
Alignment:
| Q |
534 |
actcattattaggcattaagctcaaagtctcaaacaacacactcacatgattttat |
589 |
Q |
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| T |
54616226 |
actcattattaggcattaagctcaaagtctcaaacaacacactcacatgattttat |
54616281 |
T |
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