View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_low_140 (Length: 250)

Name: NF8908_low_140
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_low_140
NF8908_low_140
[»] chr6 (4 HSPs)
chr6 (99-231)||(1953748-1953880)
chr6 (109-229)||(1939878-1939998)
chr6 (114-229)||(1924457-1924572)
chr6 (1-68)||(9852104-9852171)
[»] chr1 (2 HSPs)
chr1 (13-73)||(44621419-44621479)
chr1 (1-69)||(47932414-47932482)
[»] chr5 (1 HSPs)
chr5 (13-72)||(34509399-34509458)
[»] chr7 (1 HSPs)
chr7 (13-73)||(26000017-26000077)
[»] chr2 (2 HSPs)
chr2 (1-68)||(24538238-24538305)
chr2 (3-65)||(32277045-32277107)
[»] chr8 (1 HSPs)
chr8 (1-77)||(30850197-30850273)
[»] chr3 (3 HSPs)
chr3 (17-77)||(46835555-46835615)
chr3 (12-74)||(38511256-38511318)
chr3 (1-73)||(45640692-45640764)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 1953880 - 1953748
Alignment:
Q  99 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1953880 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcataaaaacccgttggaatttcctttgtcttcaagaacttga 1953781  T
Q  199 atgattttagtggacattggtttgcaacttcac 231  Q
    |||||||||||||||||||| ||||||||||||    
T  1953780 atgattttagtggacattggcttgcaacttcac 1953748  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 1939998 - 1939878
Alignment:
Q  109 attcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttag 208  Q
    |||||||||||||||||||||| |||||||||||||| |||| || ||||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||    
T  1939998 attcttaccaccaaggtgtacggatgtttgcatgtccggtctggacctcatagaagccagttgggatttcctttgtcttgaagaacttgaaagatttaag 1939899  T
Q  209 tggacattggtttgcaacttc 229  Q
    ||| ||||||||| |||||||    
T  1939898 tgggcattggtttacaacttc 1939878  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 1924572 - 1924457
Alignment:
Q  114 taccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttagtggac 213  Q
    |||||||||||||| || ||||||| ||||||||||||||| |||| ||| || || || ||||||||||||||||| |||||||| ||||||||||| |    
T  1924572 taccaccaaggtgtgcgtatgtttggatgtccagtcttgatatcatcgaacccagtgggcatttcctttgtcttcaaaaacttgaaagattttagtgggc 1924473  T
Q  214 attggtttgcaacttc 229  Q
    ||||  ||||||||||    
T  1924472 attgacttgcaacttc 1924457  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9852171 - 9852104
Alignment:
Q  1 gagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 68  Q
    ||||||||||||||||||||||||||| |||| ||| |||  |||||||||| ||||| |||||||||    
T  9852171 gagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagta 9852104  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 44621419 - 44621479
Alignment:
Q  13 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 73  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  44621419 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagata 44621479  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47932482 - 47932414
Alignment:
Q  1 gagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 69  Q
    |||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||||| || |||||||    
T  47932482 gagccaaaaagattaggattagagttgacacaatttcttaacattgttattagtattagaattaagtaa 47932414  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 34509399 - 34509458
Alignment:
Q  13 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagat 72  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||    
T  34509399 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagat 34509458  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 26000077 - 26000017
Alignment:
Q  13 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 73  Q
    ||||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||||||||    
T  26000077 ttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24538305 - 24538238
Alignment:
Q  1 gagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 68  Q
    |||||||||  ||||||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  24538305 gagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagta 24538238  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 32277107 - 32277045
Alignment:
Q  3 gccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataa 65  Q
    |||||||  ||||||||||||||||||||||||| |||| | ||||||| |||||| ||||||    
T  32277107 gccaaaataattaggattagggttgacacatttttttaacattgttattagtattagaaataa 32277045  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30850197 - 30850273
Alignment:
Q  1 gagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 77  Q
    |||||||||  |||| ||||||||||| |||| ||| |||  |||||||||| ||||| ||||||||| ||||||||    
T  30850197 gagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 46835555 - 46835615
Alignment:
Q  17 gattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 77  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||| ||||||||    
T  46835555 gattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 38511256 - 38511318
Alignment:
Q  12 attaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatat 74  Q
    ||||||||||| |||  || ||||| ||||||||||||||| ||||| ||||||||| |||||    
T  38511256 attaggattagagtttgcaaattttgttaaaagtgttattcatattaaaaataagtatgatat 38511318  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45640692 - 45640764
Alignment:
Q  1 gagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 73  Q
    |||||||||  ||||||||||||||||||||| ||| |||| | |||||||  ||||| | |||| |||||||    
T  45640692 gagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagata 45640764  T

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