View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_142 (Length: 246)
Name: NF8908_low_142
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_142 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 12808432 - 12808330
Alignment:
| Q |
85 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12808432 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
12808333 |
T |
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| Q |
185 |
agt |
187 |
Q |
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||| |
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| T |
12808332 |
agt |
12808330 |
T |
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Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 2634152 - 2634254
Alignment:
| Q |
85 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2634152 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
2634251 |
T |
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| Q |
185 |
agt |
187 |
Q |
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||| |
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| T |
2634252 |
agt |
2634254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 5857 - 5755
Alignment:
| Q |
85 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5857 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagttgagaaacataatc |
5758 |
T |
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| Q |
185 |
agt |
187 |
Q |
| |
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||| |
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| T |
5757 |
agt |
5755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 4638118 - 4638209
Alignment:
| Q |
95 |
taattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcag |
186 |
Q |
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|||||| |||||||| || ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||| |||| |
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| T |
4638118 |
taattgacataaacagcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagataaaaaacatactcag |
4638209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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