View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_144 (Length: 245)
Name: NF8908_low_144
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_144 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33122693 - 33122930
Alignment:
| Q |
1 |
ccattagcttggtaactccaaacacgcttgtcttgttgcgaattagagagagagactaggaatattaagaattgctgctacgttaaaaatagatagaact |
100 |
Q |
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| T |
33122693 |
ccattagcttggtaactccaaacacgcttgtcttgttgcgaattagag----agactaggaatattaagaattgcagctacgttaaaaatagacagaact |
33122788 |
T |
|
| Q |
101 |
aactcaatattccaagagttgttggcatgaataataataata------tgacttgctagaagctcatacaaatgtgattgcatagcttacttattgattt |
194 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33122789 |
aactcaatattccaagagttgttgaaatgaataataataataataatgtgacttgctagaagctcatacaaatgtgatttcatagcttacttattgattt |
33122888 |
T |
|
| Q |
195 |
taatgtatttgaaatactggtgtataagatcataagtataat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33122889 |
taatgtatttgaaatactggtgtataagatcataagtataat |
33122930 |
T |
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