View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_147 (Length: 242)
Name: NF8908_low_147
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25180178 - 25180400
Alignment:
| Q |
1 |
accagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgata |
100 |
Q |
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| T |
25180178 |
accagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgata |
25180277 |
T |
|
| Q |
101 |
atgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatat |
200 |
Q |
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| T |
25180278 |
atgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcatat |
25180377 |
T |
|
| Q |
201 |
ccattttgactgtaactccatgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
25180378 |
ccattttgactgtaactccatgg |
25180400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 25168513 - 25168733
Alignment:
| Q |
4 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
103 |
Q |
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| T |
25168513 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
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| Q |
104 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
203 |
Q |
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| T |
25168613 |
tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcataccca |
25168712 |
T |
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| Q |
204 |
ttttgactgtaactccatggt |
224 |
Q |
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| T |
25168713 |
tcttgactgtaagtccatggt |
25168733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 25252753 - 25252533
Alignment:
| Q |
4 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
103 |
Q |
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||||||| | ||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
25252753 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
|
| Q |
104 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
203 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||| ||| |
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| T |
25252653 |
tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcataccca |
25252554 |
T |
|
| Q |
204 |
ttttgactgtaactccatggt |
224 |
Q |
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| |||||||||| |||||||| |
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| T |
25252553 |
tcttgactgtaagtccatggt |
25252533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 25159966 - 25160171
Alignment:
| Q |
18 |
gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag |
117 |
Q |
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||||| ||||| | |||||||||||| ||| ||| || |||||||||||| ||| ||||| ||||| || |||||||| ||||||| || ||||| | |
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| T |
25159966 |
gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg |
25160065 |
T |
|
| Q |
118 |
gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaact |
217 |
Q |
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| T |
25160066 |
gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagct |
25160165 |
T |
|
| Q |
218 |
ccatgg |
223 |
Q |
| |
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|||||| |
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| T |
25160166 |
ccatgg |
25160171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 224
Target Start/End: Complemental strand, 9213949 - 9213773
Alignment:
| Q |
48 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat |
147 |
Q |
| |
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||||| || |||||||||||||| |||||| | ||||||||||||||||| || |||| |||| ||| || || | |||||||||| |||||||||| |
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| T |
9213949 |
tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat |
9213850 |
T |
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| Q |
148 |
tgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggt |
224 |
Q |
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| T |
9213849 |
ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggt |
9213773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
| Q |
48 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca |
145 |
Q |
| |
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|||||||| |||||||| || | |||||| ||||||||||| || ||| | | ||||||||||||||| || || || || |||||||| |||||||| |
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| T |
30361145 |
tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca |
30361048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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