View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_150 (Length: 240)
Name: NF8908_low_150
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_150 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9882309 - 9882547
Alignment:
| Q |
1 |
aagggctgtgcaaaaccaagttgttttaaagagtggccacagatctttgaaggcaatcagagctgaatggtctcgaatattgcaaggctgtcataaatca |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9882309 |
aagggctgtgcaaaaccaagttgttttaa-gagtggccacagatctttgaaggcaatcagagctgaatggtctcggatattgcaaggctgtcataaatca |
9882407 |
T |
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| Q |
101 |
gaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactacctgcaatgcaacaaaataaatcgatgagagacaaaactttctccgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
9882408 |
gaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactacctgcaatgcaacaaaataaatcgatgagagacaaaactttttctgcg |
9882507 |
T |
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| Q |
201 |
agcagcaggaacacaaaagctaagtcagggaactatctac |
240 |
Q |
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| T |
9882508 |
agcagcaggaacacaaaagctaagtcagggaactatctac |
9882547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20424171 - 20423927
Alignment:
| Q |
1 |
aagggctgtgcaaaaccaagttgttttaaagagtggccacagatctttgaaggcaatcagagctgaatggtctcgaatattgcaaggctgtcataaatca |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
20424171 |
aagggctgtgcaaaaccaagttgttttaa-gagtggctacggatctttgaaggcaatcagagctgaatg-tctcagatattgcaaggctgtcataaatca |
20424074 |
T |
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| Q |
101 |
gaaggcgaggtggagagttcttgacggtgtgaaacttaagttcccggaactac-------ctgcaatgcaacaaaataaatcgatgagagacaaaacttt |
193 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20424073 |
gaaggcgaggtggagagttcttgacggtgcgaaacttaagttcccggaaatacctgcaaactgcaatgcaacaaaataaatcgatgagagacaaaacttt |
20423974 |
T |
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| Q |
194 |
ctccgcgagcagcaggaacacaaaagctaagtcagggaactatctac |
240 |
Q |
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| T |
20423973 |
ctccgcgagcagcagcaacacgaaagctaagtcagggaactatctac |
20423927 |
T |
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