View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_155 (Length: 238)
Name: NF8908_low_155
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_155 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 21468959 - 21469167
Alignment:
| Q |
15 |
gagaaaagtgatgtatacagctatggtatagttgtattagaagtactaacaggtaaacaaccaattgatccaacaataccagatggacttcacattgttg |
114 |
Q |
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| T |
21468959 |
gagaaaagcgatgtatacagctatggtattgttgtattagaagtactaacaggtaaacaaccaattgatccaacaataccagatggacttcacattgttg |
21469058 |
T |
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| Q |
115 |
attgggttagacaaaaaagaggtggagttgaagtgctcgatgaaagcttaagagcaaggccagaatccgaaattgaagaaatgttgcagactttaggtgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
21469059 |
attgggttagacaaaaaagaggtggagttgaagtgctcgatgaaagcttaagagcaaggccagaatctgaaatcgaagaaatgttgcagactttaggtgt |
21469158 |
T |
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| Q |
215 |
tgctttgtt |
223 |
Q |
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||||||||| |
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| T |
21469159 |
tgctttgtt |
21469167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 20133019 - 20133123
Alignment:
| Q |
33 |
agctatggtatagttgtattagaagtactaacaggtaaacaaccaattgatccaacaataccagatggacttcacattgttgattgggttagacaaaaaa |
132 |
Q |
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||||| ||| ||||| | |||||||| | || ||||| ||||||||||||||||| |||||||| || | ||| ||||||||||||| ||||| |||| |
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| T |
20133019 |
agctacggtgtagttttgttagaagtcttgacgggtaagcaaccaattgatccaaccataccagacggtttacacgttgttgattgggtgagacagaaaa |
20133118 |
T |
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| Q |
133 |
gaggt |
137 |
Q |
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||||| |
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| T |
20133119 |
gaggt |
20133123 |
T |
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