View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_156 (Length: 238)
Name: NF8908_low_156
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_156 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25745829 - 25746051
Alignment:
| Q |
1 |
attcagaacagttcgaaaacctttatacaacagtttaaaaaactagttgggtttgagattttaaaactagtgcactgaacctattaaatcggatttaagt |
100 |
Q |
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| T |
25745829 |
attcagaacagttcgaaaacctttatacaacagtttaaaaaactagttgggtttgagattttaaaactagtgcactgaacctattaaatcggatttaagt |
25745928 |
T |
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| Q |
101 |
tatagacggttcaattttttcaaggagaaataagctacaataatgaggtcatgaaattatggaaggaaataaacctccacgaggagaaataagctaaatc |
200 |
Q |
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| T |
25745929 |
tatagacggttcaattttttcaaggagaaataagctacaataatgaggtcatgaaattatggaaggaaataaacctccacgaggagaaataagctaaatc |
25746028 |
T |
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| Q |
201 |
ataaaaacaatgattgaattttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
25746029 |
ataaaaacaatgattgaattttt |
25746051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 25762543 - 25762599
Alignment:
| Q |
110 |
ttcaattttttcaaggagaaataagctacaataatgaggtcatgaaattatggaagg |
166 |
Q |
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||||||||||||||| ||||||||||||| |||| || ||| || ||||||||||| |
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| T |
25762543 |
ttcaattttttcaagaagaaataagctacgataacgacatcaagatattatggaagg |
25762599 |
T |
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