View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_161 (Length: 237)
Name: NF8908_low_161
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_161 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 38099766 - 38099972
Alignment:
| Q |
40 |
aacaacatatatgtgattcaacggacaggaaaattcaaactttaactcacagtaagagcaatttg---------------attttatttacaaagaatgt |
124 |
Q |
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| T |
38099766 |
aacaacatatatgcgattcaacggataggaaaattcaaactttaactcacagtaagagcaatttgatcacattaattttgattttatttacaaagaatgt |
38099865 |
T |
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| Q |
125 |
tgtgttagttactatctttcttcattgaacaacttgaataatgaatgaattctatatacaatatacaaatgaattttcggcgctgccatcttgtgcatgc |
224 |
Q |
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| T |
38099866 |
tgtgttggttactatctttcttcattgaacaacttgaataatgaatgaattctatatacaatatacaaatgaattttcggcgctaccatcttgtgcatgc |
38099965 |
T |
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| Q |
225 |
atatctt |
231 |
Q |
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||||||| |
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| T |
38099966 |
atatctt |
38099972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 38099712 - 38099757
Alignment:
| Q |
39 |
aaacaacatatatgtgattcaacggacaggaaaattcaaactttaa |
84 |
Q |
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| T |
38099712 |
aaacaacatatatgtgattcaacggacaggaaaattcaaactttaa |
38099757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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