View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_163 (Length: 232)
Name: NF8908_low_163
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_163 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 3186622 - 3186418
Alignment:
| Q |
12 |
attattctcactctggaacaccattggtttgatatgtgtatactttctgtgatatttgtatagcatacacagnnnnnnnnnnnnnnnnnnnngagttatg |
111 |
Q |
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| T |
3186622 |
attattctcactctggaacaccattggtttgatatgtgtatactttctgtgatatttgtatagcatacacagtttttgctttttgtttttttgagttatg |
3186523 |
T |
|
| Q |
112 |
agaatccttagctccaatggttgactttgattaacatacatgataggcttatatatgaaaatttgttcctaccacctccacaaatttgagttattaggtt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3186522 |
agaatccttagctccaatggttgactttgattaacatacatgataggcttatatatcaaaatttgttcctaccacctccacaaatttgagttattaggtt |
3186423 |
T |
|
| Q |
212 |
tttac |
216 |
Q |
| |
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||||| |
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| T |
3186422 |
tttac |
3186418 |
T |
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