View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_166 (Length: 213)
Name: NF8908_low_166
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_166 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 25884201 - 25883989
Alignment:
| Q |
1 |
tgctgttgatgctcaaacaggatcgtttatttttaaagtaagaacaaagataaaattcatagtttttatgatataacaaattgattttcattataaatga |
100 |
Q |
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| T |
25884201 |
tgctgttgatgctcaaacaggatcgtttatttttaaagtaagaacaaagctaaaattcatagtttttatgatataacaaattgattttcattataaatga |
25884102 |
T |
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| Q |
101 |
attgtaagttttaaatttctaatacaaataacaaccgattctctatccttttgcaggaatgtatcatgggagctctgaaagataggacggttttacttgt |
200 |
Q |
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| T |
25884101 |
attgtcagttttaaatttctaatacaaataacaaccgattctctatctttttgcaggaatgtatcatgggagctctgaaagataagacggttttacttgt |
25884002 |
T |
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| Q |
201 |
aacacaccaagtt |
213 |
Q |
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| T |
25884001 |
aacacaccaagtt |
25883989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 14318789 - 14318730
Alignment:
| Q |
154 |
caggaatgtatcatgggagctctgaaagataggacggttttacttgtaacacaccaagtt |
213 |
Q |
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| T |
14318789 |
caggaatgtatcatgggagctctcaaagataagactgttttacttgtaacccaccaagtt |
14318730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 14302365 - 14302303
Alignment:
| Q |
151 |
ttgcaggaatgtatcatgggagctctgaaagataggacggttttacttgtaacacaccaagtt |
213 |
Q |
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| T |
14302365 |
ttgcaggaatgtatcatgggaactctcaaagataaggcagttttacttgtaacacaccaagtt |
14302303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 14280968 - 14280906
Alignment:
| Q |
151 |
ttgcaggaatgtatcatgggagctctgaaagataggacggttttacttgtaacacaccaagtt |
213 |
Q |
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| T |
14280968 |
ttgcaggaatgtatcatgggaactcttaaagataaaactgttttacttgtaacacatcaagtt |
14280906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14302572 - 14302524
Alignment:
| Q |
1 |
tgctgttgatgctcaaacaggatcgtttatttttaaagtaagaacaaag |
49 |
Q |
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| T |
14302572 |
tgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaag |
14302524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 14281184 - 14281134
Alignment:
| Q |
5 |
gttgatgctcaaacaggatcgtttatttttaaagtaagaacaaagataaaa |
55 |
Q |
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| T |
14281184 |
gttgatgctcaaacaggatcatttatttttaaggcaagcacaaagttaaaa |
14281134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14319020 - 14318979
Alignment:
| Q |
1 |
tgctgttgatgctcaaacaggatcgtttatttttaaagtaag |
42 |
Q |
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| T |
14319020 |
tgctgttgatgctgaaacaggatcatttatttttaaggtaag |
14318979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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