View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_168 (Length: 202)
Name: NF8908_low_168
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_168 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 11483074 - 11483251
Alignment:
| Q |
18 |
cttatattgttttttgttacaggaacatggaaggaagaaaagtgcaacaattacctcatcatattgatctaaatgagcggacttcaattcaagatctccc |
117 |
Q |
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| T |
11483074 |
cttatattgttttttgttacaggaacatggaaggaagaaaagtgcaacaattacctcatcatatcgatctaaatgagcggacttcaattcaagatctccc |
11483173 |
T |
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| Q |
118 |
tgagaatagcttggaccaacaacgaaagaaacttgacattgttgttgagtccggtcgtgccgttgcaacaccaaactc |
195 |
Q |
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| T |
11483174 |
tgagaatagcttggaccaacaacgagagaaacttgacactgtcgttgagttcggtcgtgccgttgcaattccaaactc |
11483251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 11490556 - 11490668
Alignment:
| Q |
27 |
ttttttgttacaggaacatggaaggaagaaaagtgcaacaattacctcatcatattgatctaaatgagcggacttcaattcaagatctccctgagaatag |
126 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
11490556 |
tttttggttataggaacatggaaggaagaaaagtgcaacaattacctcatcatattgatttaaatgagcggacttcaattcaagatccctctgagaatag |
11490655 |
T |
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| Q |
127 |
cttggaccaacaa |
139 |
Q |
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| T |
11490656 |
catggaacaacaa |
11490668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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