View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_18 (Length: 566)
Name: NF8908_low_18
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Complemental strand, 42034045 - 42033488
Alignment:
| Q |
17 |
accctctactctagtttttacacactcccggtttaattaattagtcaaaagatgctaatgttagtctacacaactatacacattatggttttaccaattg |
116 |
Q |
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| T |
42034045 |
accctctactctagtttttacacactcccggtttaattaattagtcacaagatgctaatgttagtctacacaactatacacattatggttttaccaattg |
42033946 |
T |
|
| Q |
117 |
tgtaattgctatccaccctacaagtacaatgtctctattttccatttaatgaactcttttgctatggtacagatcttaatttgaaattgattttcaattt |
216 |
Q |
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| T |
42033945 |
tgtaattgctatccaccctacaagtacaatgtctctattttccatttaatgaactcttttgctatggtacagatcttaatttgaaattgattttcaattt |
42033846 |
T |
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| Q |
217 |
gatttgctttcctattattcggta--------------caatagcaattatgaagagatcaattgaatggtatatttacattacacacgtggatgcaggg |
302 |
Q |
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| T |
42033845 |
gatttgctttcctattattcggtatatatatataggtacaatagcaattatgaagagatcaattgaatggtatatttacattacacatgtggatgcaggg |
42033746 |
T |
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| Q |
303 |
agagagaagattaattagataggtcgtgaattccgattttaaatggtagtattaatcatttccactggttggtacttcaaattgaaaccataaaaggtat |
402 |
Q |
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| T |
42033745 |
agagagaagattaattagataggtcgtgaattcagattttaaatggtagtattaatcatttccactggttggtacttcaaattgaaaccataaaaggtat |
42033646 |
T |
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| Q |
403 |
acgtatttattaagtatactactctaaattgagaatgaaaattgaaaatcaagactcaactgcagtcattgaaatccaatctcatta-----aatttaca |
497 |
Q |
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| T |
42033645 |
acgtatttattaagtatactactctaaattgagaatgaaaattgaaaatcaagactcaactgcagtcattgaaatccaatctcattaaattaaatttaca |
42033546 |
T |
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| Q |
498 |
tgttgtaaacctaaatctgaactaattactctcgttttttacatattctaatctctct |
555 |
Q |
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| T |
42033545 |
tattgtaaacctaaatctgaactaattattctcgttttttacatattctaatctctct |
42033488 |
T |
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