View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_low_2 (Length: 1427)

Name: NF8908_low_2
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_low_2
NF8908_low_2
[»] chr6 (9 HSPs)
chr6 (381-1278)||(26265338-26266236)
chr6 (855-1412)||(26267772-26268329)
chr6 (916-1068)||(26267185-26267338)
chr6 (1287-1410)||(26264557-26264680)
chr6 (43-132)||(2759202-2759291)
chr6 (41-125)||(28963824-28963907)
chr6 (1145-1240)||(26264699-26264793)
chr6 (1015-1084)||(26266253-26266322)
chr6 (42-125)||(29157136-29157222)
[»] scaffold0009 (2 HSPs)
scaffold0009 (236-636)||(71148-71544)
scaffold0009 (449-644)||(70712-70909)
[»] chr2 (13 HSPs)
chr2 (26-403)||(30637187-30637567)
chr2 (299-617)||(30635920-30636232)
chr2 (21-136)||(30635802-30635917)
chr2 (43-132)||(6296858-6296945)
chr2 (41-132)||(10159665-10159754)
chr2 (43-132)||(22845430-22845518)
chr2 (43-131)||(35602657-35602745)
chr2 (43-129)||(28856147-28856231)
chr2 (356-473)||(30636595-30636711)
chr2 (41-114)||(30659201-30659271)
chr2 (558-655)||(30636459-30636556)
chr2 (43-80)||(19588682-19588719)
chr2 (55-132)||(30629915-30629992)
[»] chr3 (10 HSPs)
chr3 (784-1410)||(23573943-23574570)
chr3 (41-132)||(8888973-8889064)
chr3 (41-132)||(8884227-8884318)
chr3 (41-132)||(3673623-3673713)
chr3 (43-132)||(10585128-10585214)
chr3 (41-125)||(3693677-3693760)
chr3 (43-132)||(3034703-3034791)
chr3 (41-132)||(8070736-8070824)
chr3 (43-132)||(631995-632084)
chr3 (54-132)||(45903522-45903598)
[»] chr8 (12 HSPs)
chr8 (41-132)||(31448811-31448902)
chr8 (41-132)||(4237288-4237378)
chr8 (41-132)||(4242027-4242117)
chr8 (41-132)||(43301690-43301781)
chr8 (43-127)||(8330329-8330411)
chr8 (50-132)||(25361668-25361747)
chr8 (43-132)||(37772777-37772866)
chr8 (71-129)||(21959473-21959529)
chr8 (43-132)||(34817682-34817771)
chr8 (53-120)||(14036507-14036572)
chr8 (22-83)||(18945004-18945065)
chr8 (43-132)||(42973153-42973242)
[»] chr7 (14 HSPs)
chr7 (43-132)||(27257280-27257367)
chr7 (43-132)||(40864343-40864432)
chr7 (41-132)||(23866782-23866870)
chr7 (43-130)||(47102594-47102681)
chr7 (59-132)||(9649907-9649980)
chr7 (61-132)||(11017025-11017101)
chr7 (29-132)||(13343374-13343477)
chr7 (41-132)||(10499074-10499163)
chr7 (41-132)||(10504103-10504192)
chr7 (96-132)||(18330336-18330372)
chr7 (28-83)||(8077043-8077098)
chr7 (38-115)||(19641346-19641421)
chr7 (51-80)||(9010415-9010444)
chr7 (95-132)||(40997790-40997827)
[»] chr5 (16 HSPs)
chr5 (43-132)||(21322983-21323070)
chr5 (41-132)||(32460491-32460582)
chr5 (43-132)||(13300432-13300519)
chr5 (41-132)||(557753-557843)
chr5 (41-132)||(12044078-12044169)
chr5 (43-132)||(31732612-31732698)
chr5 (50-132)||(41997708-41997790)
chr5 (41-124)||(36941219-36941301)
chr5 (50-132)||(42002499-42002581)
chr5 (41-132)||(562525-562613)
chr5 (41-132)||(36936457-36936547)
chr5 (74-132)||(36949777-36949835)
chr5 (50-132)||(24435126-24435204)
chr5 (43-135)||(3666935-3667023)
chr5 (62-130)||(23347857-23347925)
chr5 (45-132)||(8041205-8041286)
[»] scaffold0182 (1 HSPs)
scaffold0182 (41-132)||(8828-8919)
[»] scaffold0041 (1 HSPs)
scaffold0041 (43-132)||(34667-34754)
[»] chr1 (9 HSPs)
chr1 (297-426)||(14177846-14177973)
chr1 (50-129)||(40232337-40232415)
chr1 (41-132)||(3095146-3095236)
chr1 (50-132)||(33055849-33055929)
chr1 (43-128)||(13894310-13894395)
chr1 (43-132)||(41096897-41096982)
chr1 (56-107)||(8273126-8273177)
chr1 (98-132)||(14204512-14204546)
chr1 (50-125)||(23254159-23254236)
[»] chr4 (8 HSPs)
chr4 (43-129)||(41817846-41817930)
chr4 (43-132)||(3992715-3992802)
chr4 (43-132)||(34561468-34561555)
chr4 (56-132)||(7899900-7899973)
chr4 (59-132)||(13520932-13521005)
chr4 (50-132)||(31297472-31297553)
chr4 (43-123)||(39320625-39320703)
chr4 (95-132)||(15541600-15541637)
[»] scaffold0060 (2 HSPs)
scaffold0060 (43-132)||(51858-51945)
scaffold0060 (51-132)||(46919-46994)
[»] scaffold0061 (1 HSPs)
scaffold0061 (43-132)||(48904-48987)
[»] scaffold0017 (1 HSPs)
scaffold0017 (43-132)||(149647-149730)
[»] scaffold0070 (2 HSPs)
scaffold0070 (43-132)||(59469-59555)
scaffold0070 (43-132)||(63671-63757)
[»] scaffold0045 (1 HSPs)
scaffold0045 (50-132)||(83974-84056)
[»] scaffold0628 (3 HSPs)
scaffold0628 (43-125)||(7493-7575)
scaffold0628 (65-132)||(5747-5814)
scaffold0628 (515-639)||(493-619)
[»] scaffold0484 (1 HSPs)
scaffold0484 (50-132)||(7983-8062)
[»] scaffold0015 (1 HSPs)
scaffold0015 (71-129)||(213319-213375)
[»] scaffold0131 (1 HSPs)
scaffold0131 (53-132)||(8622-8700)


Alignment Details
Target: chr6 (Bit Score: 607; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 381 - 1278
Target Start/End: Complemental strand, 26266236 - 26265338
Alignment:
Q  381 atcttcccacgtcccgtctcttagaacaaaaccctagcttgctagaacnnnnnnnnncctttgatctatttcatttaccacatatataaagaacgaaata 480  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||         |||||||||||||||||||||||||||||||||||| ||||||    
T  26266236 atctttccacgtcccgtctcttagaacaaacccctagcttgttagaactttttttttcctttgatctatttcatttaccacatatataaagaaagaaata 26266137  T
Q  481 aacaaaaacatattcataatacagaaagttaaacaatagactatacatcaactttatgaaggctaacttaaaagacgaaaatgccattataattttttct 580  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  26266136 aacaaaaacatattcagaatacacaaagttaaacaatagactatatagcaactt-atgaaggctaacttaaaagacgaaaatgtcattataattttttct 26266038  T
Q  581 gatttgagagagaagggagggtgtaagtgtcatttcaagttaataatacaatcaatattatgcatgtccgaggaaaagataatgatctaagatttggttc 680  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  26266037 gatttaagagagaagggagg-tgtaagtgtcatttcaagttaataatacagtcaatattatgcaggtccgaggaa--gataatgatctaagatttggttc 26265941  T
Q  681 ttataaaaataa--------------atgatctaactctaagtattggttaggtggattgtagaatattatttttagagtcacatttcttcaagttggtc 766  Q
    ||||||||| ||              ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26265940 ttataaaaaaaataaaaataaaaataatgatctaactctaagtataggttaggtggattgtagaatattatttttagagtcacatttcttcaagttggtc 26265841  T
Q  767 atggtaataatcttcataatttactcaaacaatgttaaatatgtttcatagtataaaatttccttttagtgatatttattagtacacctccattagttcg 866  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26265840 atggtaataatcttcataatttactcgaacaatgttaaatatgtttcatagtataaa-tttcctttcagtgatatttattagtacacctccattagttcg 26265742  T
Q  867 aactcacgtaaagaagtggttaaattagtaaacaaaatcagttaatcataataataatatatttgttaacggtgtgttttaacttcagaattgaacttca 966  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  26265741 aactcacgtaaagaagtggttaaattagtaaacaaaatcagttattaataataataatatatttgttaacggtgtgttttaacttcaaaattgaacttta 26265642  T
Q  967 --taagaatgaacaaggtaaataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaac 1064  Q
      ||||||| || ||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26265641 tgtaagaataaagaaggtaaataagattcttatatattatgaatatcaactattttaaaattaaaatatatgccacacaaccccataaactaaactaaac 26265542  T
Q  1065 taaatcctcttacaacacacaagcatgcgcgcgtgcgcgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaatt 1164  Q
    ||||||||||||||||||||||||||||||||||          ||||| |||| ||||| |||||| |||||||||||||||||| |||||||| ||||    
T  26265541 taaatcctcttacaacacacaagcatgcgcgcgt----------acacacatgcctgtgactaattacatttacttcacaattcatacatcttttgaatt 26265452  T
Q  1165 catagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgag 1264  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26265451 catagaatatcatttaagaatgactaatctactttcattgttctttgtcacaagaatgatattgatttgtttcaaaattgagaatagtaaacggcttgag 26265352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 855 - 1412
Target Start/End: Complemental strand, 26268329 - 26267772
Alignment:
Q  855 tccattagttcgaactcacgtaaagaagtggttaaattagtaaacaaaatcagttaatcataataataatatatttgttaacggtgtgttttaacttcag 954  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26268329 tccattagttcgaactcacgtaaagaagtggttaaattagtaaacaaaatcagttaatcataataataatatatttgttaacggtgtgttttaacttcag 26268230  T
Q  955 aattgaacttcataagaatgaacaaggtaaataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccataaac 1054  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26268229 aattgaacttcataagaatgaacaaggtaaataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccataaac 26268130  T
Q  1055 taaactaaactaaatcctcttacaacacacaagcatgcgcgcgtgcgcgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcat 1154  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26268129 taaactaaactaaatcctctcacaacacacaagcatgcgcgcgtgcgcgcgcacacacatatgcatgtgattaattatatttacttcacaattcattcat 26268030  T
Q  1155 cttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaa 1254  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26268029 cttttgaattcatagaatattatttaagaatgactaatctactttcattattctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaa 26267930  T
Q  1255 acggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgat 1354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  26267929 acggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggttacgaagtaattgat 26267830  T
Q  1355 aacatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgctgatgtcc 1412  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  26267829 aacatcaaagaagagctagaaaagaaagatcccgatgtggtttcttgtgctgatgtcc 26267772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 916 - 1068
Target Start/End: Complemental strand, 26267338 - 26267185
Alignment:
Q  916 aataataatatatttgttaacggtgtgttttaacttcagaat-tgaacttca--taagaatgaacaaggtaaataagattcttatatattatgaatacga 1012  Q
    |||||||||||||||||||||||||||| ||||||||| ||  | |||||||  ||| || |||||||||||| ||||||||||||||  |||||||  |    
T  26267338 aataataatatatttgttaacggtgtgtattaacttcaaaaactcaacttcacgtaataaagaacaaggtaaacaagattcttatata--atgaatatca 26267241  T
Q  1013 agtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaa 1068  Q
    ||||||||| |||||||||||||  || ||||||| | ||||||||||||| ||||    
T  26267240 agtattctataattaaaatatataacatacaaccctacaaactaaactaaagtaaa 26267185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1287 - 1410
Target Start/End: Complemental strand, 26264680 - 26264557
Alignment:
Q  1287 tgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatct 1386  Q
    |||||||||||| ||| ||| ||||||||  ||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||  |||    
T  26264680 tgtagtagttcatgctcaagccatttactgctcctaatttgagtttaagaggctatgaagtaattgttaacatcagagaatagctagaaaagaaatgtct 26264581  T
Q  1387 cgctgtagtttcttgtgctgatgt 1410  Q
     | ||| ||||| |||||||||||    
T  26264580 tggtgtggtttcgtgtgctgatgt 26264557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 2759291 - 2759202
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| | |||||||| |||||||| |||||||||||||  | ||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  2759291 ttagaggtgcacccccattatataaatactactaatgtgtatgttccattcgatgtgggactttcacatttttcaattcacactacacta 2759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 28963907 - 28963824
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    |||||||| |||||||||  ||||||||||||||||||||||| | | | | | ||||||||||||||||||||| |||||||||    
T  28963907 tcttagaggtacacccccgatatataaacactactaatgtgtgagttgcatccaatgtgggacttccactttttt-aattcacac 28963824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1145 - 1240
Target Start/End: Complemental strand, 26264793 - 26264699
Alignment:
Q  1145 attcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaa 1240  Q
    ||||||||||||||| ||||  || || || |||||| |||| ||||| || ||||| |||||||||||||| |||||||||||| ||||||||||    
T  26264793 attcattcatcttttaaattt-tacaagatcatttaaaaatgactaatatactttcactgttctttgtcatgggaatgacattgacttgtttcaaa 26264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 1015 - 1084
Target Start/End: Complemental strand, 26266322 - 26266253
Alignment:
Q  1015 tattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaatcctcttacaacacac 1084  Q
    |||||||||| ||||||||||| |||||||||| | |||||||| |||||||||| |||| || ||||||    
T  26266322 tattctaaaactaaaatatatgacacacaaccctacaaactaaaataaactaaattctctcaccacacac 26266253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 29157222 - 29157136
Alignment:
Q  42 cttagagatacaccc-ccactatataaacacta--ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||   |||| | | |||| ||||||||| ||||||||||||||||    
T  29157222 cttagaggtacaccctccactatataaacactatactaatgtgtctaatccatccaatgtaggacttccatttttttcaattcacac 29157136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 236 - 636
Target Start/End: Complemental strand, 71544 - 71148
Alignment:
Q  236 atatatatacctagtggaatcagagcaatacaaagaaagctttacggtgcttgagaaaattatgagtcttcttcaacaatccattcttcttctttttgaa 335  Q
    ||||||||||||||||| ||||||||||||| |||| || ||| |||||||||| ||||| |||||| ||||||||||||| | |  |||||||| ||||    
T  71544 atatatatacctagtggcatcagagcaatactaagagagtttttcggtgcttgaaaaaatgatgagtattcttcaacaatcaagt--tcttctttctgaa 71447  T
Q  336 aatgtcaacttccttgtggttttgttttgaattttcttaatctcaatcttcccacgtcccgtctcttagaacaaaaccctagcttgctagaacnnnnnnn 435  Q
    ||| |||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||           
T  71446 aatttcaattgccttgtggttttgttttgaatcttcataatctcaatcttcccacgtcccatctcttagaacaaaaccctaaattgatagaacattcttt 71347  T
Q  436 nncctttgatctatttcatttaccacatatataaagaacgaaataaacaaaaacatattcataatacagaaagttaaacaatagactatacatcaacttt 535  Q
      |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||| ||||||||||||||| | |||||||    
T  71346 t-cctttgatctatttcatttaccacatatataaagaaagaaacaaacaaaaacgtattcagaatacacaaagtaaaacaatagactatatagcaacttt 71248  T
Q  536 atgaaggctaacttaaaagacgaaaatgccattataattttttctgatttgagagagaagggagggtgtaagtgtcatttcaagttaataatacaatcaa 635  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  71247 atgaaggctaacttaaaagacgaaaatgccatt-taattttttctgatttgagagagaagggagggtgtaagtgtcatttcaagttaataatacaatcaa 71149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 449 - 644
Target Start/End: Original strand, 70712 - 70909
Alignment:
Q  449 tttcatttaccacatatataaagaacgaaataaacaaaaacatattcataatacagaaagttaaacaatagactatacatcaactttatgaaggctaact 548  Q
    ||||||||| || |||||||||||| |||| |||||||||| |||||| |||||| |||||||||||||| |||||| | |||||||||| | |||||||    
T  70712 tttcatttatcatatatataaagaaagaaagaaacaaaaacgtattcaaaatacacaaagttaaacaataaactatatagcaactttatggaagctaact 70811  T
Q  549 taaa-agacgaaaatgccattataattttttctgatttgagagagaa-gggagggtgtaagtgtcatttcaagttaataatacaatcaatattatgca 644  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||| |  | |||||||||||||||| |||||||| ||||| |||||||||||||    
T  70812 taaatagacgaaaatgccattataactttttctgatttcagagagaacgaaatggtgtaagtgtcattttaagttaatgatacagtcaatattatgca 70909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 30637187 - 30637567
Alignment:
Q  26 attaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30637187 attaattatgcacctccttagaggtacacccccactatataaacactaataaagtgtgggatccgtccgatgcgggacttccacttttttcaattcacac 30637286  T
Q  126 tacactattttacaagtaagctgcgattctgctctacaaatgagtttacatcacacaaatcaaacaactttacaa-ttctagggatctaagag-----nn 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||           
T  30637287 tacactattttacaagtaagttgcgattctgctctacaaatgagtttacatcacaaaaatcaaacaactttacaatttctagggatccaagagagagaga 30637386  T
Q  220 nnnnnntgaagggtaaatatatatacctagtggaatcagagcaatacaaagaaagctttacggtgcttgagaaaattatgagtcttcttcaacaatccat 319  Q
          ||||||||||||||||||||||||||||||| ||| ||||| || | | |||| | |||||||||||||| |||||||||||| |||||||||     
T  30637387 aaaaaatgaagggtaaatatatatacctagtggaatcggaggaatactaaaataactttccagtgcttgagaaaatcatgagtcttctttaacaatcca- 30637485  T
Q  320 tcttcttctttttgaaaatgtcaacttccttgtggttttgttttgaattttcttaatctcaatcttcccacgtcccgtctctta 403  Q
      |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30637486 --ttcttctttttgaaaatgtcaactgccttgtggttttgttttgaattttcttaatctcaattttctcacgtcccgtctctta 30637567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 299 - 617
Target Start/End: Original strand, 30635920 - 30636232
Alignment:
Q  299 gagtcttcttcaacaatccattcttcttctttttgaaaatgtcaacttccttgtggttttgttttgaattttcttaatctcaatcttcccacgtcccgtc 398  Q
    |||||||||| |||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30635920 gagtcttctttaacaatccattcttctt---tttgaaaatgtcaactgccttgtggttttgttttgaattttcttaatctcaatcttcccacgttccgtc 30636016  T
Q  399 tcttagaacaaaaccctagcttgctagaacnnnnnnnnncctttgatctatttcatttaccacatatataaagaacgaaataaacaaaaacatattcata 498  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||| |||| |||||| | | |||||| |    
T  30636017 tcttagaacaaaaccctagcttgctagaacgttctttt-cctttgatctatttcatttaccatatatataaagaaagaaacaaacaacagcgtattcaga 30636115  T
Q  499 atacagaaagttaaacaatagactatacatcaactttatgaaggctaacttaaaagacgaaaatgccattataattttttctgatttgagagagaaggga 598  Q
    | | | ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||||    
T  30636116 agaaacaaagttaaacaatagactatataacaactttatgaaggctaacttaaaagatgaaaatgacattataattttttctgattt--gagagaaggga 30636213  T
Q  599 gggtgtaagtgtcatttca 617  Q
    |||||||||||||||||||    
T  30636214 gggtgtaagtgtcatttca 30636232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 30635802 - 30635917
Alignment:
Q  21 gttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaatt 120  Q
    ||||| |||||||||||||| ||||||| |||||||| |||||  |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30635802 gttcacttaattatgcacctccttagaggtacacccctactattcaaacactaataaagtgtgggatccgtccgatgtgggacttccacttttttcaatt 30635901  T
Q  121 cacactacactatttt 136  Q
    ||||||||||||||||    
T  30635902 cacactacactatttt 30635917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 6296945 - 6296858
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| | ||||||||| ||||||||||||||||||||||||||||||    
T  6296945 ttagaggtacacccccactatataaacactactaatgtgtg--atccatccgatgtgggtcttccacttttttcaattcacactacacta 6296858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 10159754 - 10159665
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| ||||||||||||||||||||||||||||| ||||   ||| | ||||||||||||||||||||||||||||||||| ||||||    
T  10159754 tcttagaggtacacccccactatataaacactactaatatgtgt--tccatccgatgtgggacttccacttttttcaattcacacaacacta 10159665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 22845430 - 22845518
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||| |||||||||||||| ||||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||||    
T  22845430 ttagaggtacacccccaccatataaacactactgatgtgtgagatccatccgatgcgggacttccac-tttttcaattcacactacacta 22845518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 35602657 - 35602745
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacact 131  Q
    |||||| |||||| ||| ||||||||||||||||||||||| | ||| | ||||||| ||||||||||||||||||||||||| |||||    
T  35602657 ttagaggtacacctccaatatataaacactactaatgtgtgtgttccatccgatgtgagacttccacttttttcaattcacacaacact 35602745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 28856147 - 28856231
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 129  Q
    |||||| |||| |||||| ||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||||||||||||||    
T  28856147 ttagaggtacatccccaccatataaacactactaatgtgtg--atccatctgatgtgggacttccacttttttcaattcacactaca 28856231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30636711 - 30636595
Alignment:
Q  356 tttgttttgaattttcttaatctcaatcttcccacgtcccgtctcttagaacaaaaccctagcttgctagaacnnnnnnnnncctttgatctatttcatt 455  Q
    |||||||||||| |||||||||||||||||| |||| ||| | |||||| ||||||||||||||||| |||||          |||||||||||||||||    
T  30636711 tttgttttgaatcttcttaatctcaatcttcgcacgccccatttcttaggacaaaaccctagcttgccagaacgttcttttt-ctttgatctatttcatt 30636613  T
Q  456 taccacatatataaagaa 473  Q
    || |||||| ||||||||    
T  30636612 tatcacatagataaagaa 30636595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 30659201 - 30659271
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttt 114  Q
    |||||||| |||||||||||||||||||||||||||||||    | ||| | ||||||||||||||||||||||    
T  30659201 tcttagaggtacacccccactatataaacactactaatgt---tgttccatccgatgtgggacttccacttttt 30659271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 558 - 655
Target Start/End: Complemental strand, 30636556 - 30636459
Alignment:
Q  558 aaaatgccattataattttttctgatttgagagagaaggga--gggtgtaagtgtcatttcaagttaataatacaatcaatattatgcatgtccgaggaa 655  Q
    |||||| |||||||| |||||||||||| |||||||||| |  ||||||||||  |||||||| ||||| ||||| || |||||||||| ||||||||||    
T  30636556 aaaatgtcattataactttttctgattttagagagaaggaaaggggtgtaagtagcatttcaatttaatgatacagtc-atattatgca-gtccgaggaa 30636459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 19588719 - 19588682
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgt 80  Q
    |||||| |||||||||||||||||||||||||||||||    
T  19588719 ttagaggtacacccccactatataaacactactaatgt 19588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 30629915 - 30629992
Alignment:
Q  55 ccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||| ||||||||| || | ||||  | | ||||  |||||||| |||||||||||||||||||||||    
T  30629915 ccccactatataaaaactactaatatgggtgatctatccaatgtaagacttccatttttttcaattcacactacacta 30629992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 784 - 1410
Target Start/End: Original strand, 23573943 - 23574570
Alignment:
Q  784 aatttactcaaacaatgttaaatatgtttcatagtataaaatttccttttagtgatatttattagt-acac-ctccattagttcgaactcacgtaaagaa 881  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||| | |||| | |||||||||| |||| | ||||| ||    
T  23573943 aatttactcaaacaatgttaaatatgtttcatagtatacaatttcctttcagtgataattattaattacacaccccattagttctaact-atgtaaaaaa 23574041  T
Q  882 gtggttaaattagtaaacaaaatcagttaatcataataataatatatttgttaacggtgtgttttaacttcagaattgaacttcat--aagaatgaacaa 979  Q
    |||| |||||||||||| ||| | |  |||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||  ||||| ||| |     
T  23574042 gtgggtaaattagtaaataaa-taa--taataataataataatatatttgttaacggtctattttaacttcaaaactgaacttcatgtaagaaagaatag 23574138  T
Q  980 ggtaaataagattcttatatattatgaatacgaagtattctaaaattaaaatatatgccacacaaccccataaactaaactaaactaaa---------tc 1070  Q
      |||| ||||||||||||   ||| ||||  ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||         ||    
T  23574139 aataaaaaagattcttataa--tattaatatcaagtattctaaaactaaaatatatgccacacaaccctacaaactaaactaaactaaactaaactaatc 23574236  T
Q  1071 ctcttacaacacacaagcatgcgcgcgtgcg-cgtgcacacacatatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatag 1169  Q
    |||| || |||||   ||| | ||||||||| ||   ||||||| |||||||||| |||||||||||||||||| ||||| ||||||||| || || |||    
T  23574237 ctctcacgacacat--gcaag-gcgcgtgcgtcgcctacacacacatgcatgtgactaattatatttacttcacgattcactcatcttttaaaatcttag 23574333  T
Q  1170 aatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatga 1269  Q
    ||||| ||||||||||||||||||   |||||  |||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| |||    
T  23574334 aatatcatttaagaatggctaatc---tttcaccgttctttgtcttgagaatgacattgatttgtttc-aaattgagagtaataaacggcttgagcgtga 23574429  T
Q  1270 actactatatgtttagctgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagag 1369  Q
    |||||||    |  |  || ||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23574430 actactacggctaaacatgcagtagttcatgctcaagtcatgtactactcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagag 23574529  T
Q  1370 ctagaaaagaaagatctcgctgtagtttcttgtgctgatgt 1410  Q
    ||||||||||||  || |  ||| |||||||||| ||||||    
T  23574530 ctagaaaagaaatgtcccaatgtggtttcttgtgttgatgt 23574570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 8888973 - 8889064
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||||    
T  8888973 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacacta 8889064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 8884227 - 8884318
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |||||||||||||||| ||||||    
T  8884227 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacacta 8884318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 3673623 - 3673713
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  3673623 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccac-tttttcaattcacacaacacta 3673713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 10585214 - 10585128
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  10585214 ttagaggtacacccccactatataaacactactaatgtgt--gatccatccgatgtgggacttccac-tttttcaattcacactacacta 10585128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 3693677 - 3693760
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||| |||||||||||||||    
T  3693677 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccac-tttttcaattcacac 3693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 3034703 - 3034791
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||||||||||||||||   ||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  3034703 ttagaggtacacccccactatataaacactactaatgtgtgtattccatccgatgtgggacttccac-tttttcaattcacacaacacta 3034791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 8070736 - 8070824
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||  | ||| | |||||||||||||||| |||||||||||||||| ||||||    
T  8070736 tcttagaggtacacccccactatataaacactactaatgtgt--gttccatccgatgtgggacttcca-ttttttcaattcacacaacacta 8070824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 631995 - 632084
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| | ||| |||  ||||| |||||||| ||||||||||| ||||    
T  631995 ttagaggtacacccccactatataaacactactaatgtgagggatccatccgacgtgaaacttctactttttttaattcacactaaacta 632084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 45903598 - 45903522
Alignment:
Q  54 cccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||||||||||||||||||||||||||  |||  | ||||||| |||||||| |||||||||||||||||||||||    
T  45903598 cccccactatataaacactactaatgtgtg--atctatccgatgtgagacttccaattttttcaattcacactacacta 45903522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 1e-29; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 31448902 - 31448811
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||||    
T  31448902 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacacta 31448811  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 4237378 - 4237288
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| |||||||||||||| ||||||    
T  4237378 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccact-ttttcaattcacacaacacta 4237288  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 4242117 - 4242027
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| |||||||||||||| ||||||    
T  4242117 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccact-ttttcaattcacacaacacta 4242027  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 43301781 - 43301690
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| ||||||||||||||||||||||||||||||| || | ||| | |||||| |||||||||||||||||||||||||| ||||||    
T  43301781 tcttagaggtacacccccactatataaacactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacacta 43301690  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 8330411 - 8330329
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacacta 127  Q
    |||||| |||||||| ||||||||||||||||||||||||  ||||| | ||||||||||||| |||||||||||||||||||||    
T  8330411 ttagaggtacacccctactatataaacactactaatgtgt--gatccatccgatgtgggactttcacttttttcaattcacacta 8330329  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 25361747 - 25361668
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||| |||||||||||||| |||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  25361747 tacatccccactatataaatactactaatgtgt--gatccatccgatgtgggacttccac-tttttcaattcacactacacta 25361668  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 37772777 - 37772866
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca---cttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||    |||||||||||||||||||||||    
T  37772777 ttagaggtacacccccactatataaacactactaatgtgt--gatcc-atcgatgtgggacttccattttttttttcaattcacactacacta 37772866  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 21959473 - 21959529
Alignment:
Q  71 ctactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 129  Q
    |||||||||||||  |||| || |||||| |||||||||||||||||||||||||||||    
T  21959473 ctactaatgtgtg--atccatttgatgtgagacttccacttttttcaattcacactaca 21959529  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 34817771 - 34817682
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca--cttttttcaattcacactacacta 132  Q
    |||||| ||||| |||| ||||||||||||||||||||||  ||||| | |||||| | |||||||   ||||||||||| |||||||||||    
T  34817771 ttagaggtacactcccaatatataaacactactaatgtgt--gatccatccgatgtagaacttccatttttttttcaatttacactacacta 34817682  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 14036507 - 14036572
Alignment:
Q  53 acccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaatt 120  Q
    ||||||||||||||||||||| || | ||||  |||| ||| ||||| ||||||||||||||||||||    
T  14036507 acccccactatataaacactaatagtatgtg--atccattcaatgtgagacttccacttttttcaatt 14036572  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 18945065 - 18945004
Alignment:
Q  22 ttcaattaattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 83  Q
    |||| |||||||||||||   |||||| || ||||| | |||||||||||||||||||||||    
T  18945065 ttcacttaattatgcacccctttagaggtataccccaattatataaacactactaatgtgtg 18945004  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 42973153 - 42973242
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||| || |||| |||| | | | |  |||||| ||||||||||||||| || |||| | ||||||    
T  42973153 ttagaggtacacccccactatataaacattattaatatgtgtgtttcatctgatgtgagacttccactttttttaagtcacgcaacacta 42973242  T

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Target: chr7 (Bit Score: 67; Significance: 4e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 27257280 - 27257367
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||| |  |||||||||||||||||||||||||||||||||||||||    
T  27257280 ttagagatacacccccactatataaacactactaatgtgt--gatccatctgatgtgggacttccacttttttcaattcacactacacta 27257367  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 40864432 - 40864343
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcca--cttttttcaattcacactacacta 132  Q
    |||||| |||||| ||||||||||||||||||||||||||  ||||| | |||| |||||||||||   |||||||||||||||||||||||    
T  40864432 ttagaggtacacctccactatataaacactactaatgtgt--gatccatccgatctgggacttccatttttttttcaattcacactacacta 40864343  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 23866782 - 23866870
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccac-ttttttcaattcacactacacta 132  Q
    |||||||| |||||||||| ||||||||||||||||||||||    ||| | | ||||||||||||||| |||||||||||||||| ||||||    
T  23866782 tcttagaggtacacccccattatataaacactactaatgtgt----tccatccaatgtgggacttccactttttttcaattcacacaacacta 23866870  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 47102594 - 47102681
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacac 130  Q
    |||||| |||||||||| ||||||||||||||| ||||||| | ||| | || | ||||||||||||||||||||||| |||| ||||    
T  47102594 ttagaggtacacccccaatatataaacactactgatgtgtgtgttccatccgctatgggacttccacttttttcaatttacacaacac 47102681  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 9649980 - 9649907
Alignment:
Q  59 actatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||||||||||   | | | |||||||| |||||||||||||||||||||||| ||||||    
T  9649980 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacacta 9649907  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 11017101 - 11017025
Alignment:
Q  61 tatataaacactactaatgtgtgggatccgttcgatgtgggacttccactttttt-----caattcacactacacta 132  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||     |||||||||||||||||    
T  11017101 tatataaacactactaatgtgtgtgatccatccgatgtgggacttccatttttttttctacaattcacactacacta 11017025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 13343477 - 13343374
Alignment:
Q  29 aattatgcaccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactac 128  Q
    ||||| ||||||  |||||  |||||||| | |||||||||| || ||||| ||| | ||| | ||||| ||||| ||||||||||||||||||||| ||    
T  13343477 aattacgcacctctttagatgtacaccccaattatataaacaatattaatgcgtgtgttccatccgatgcgggacatccacttttttcaattcacacaac 13343378  T
Q  129 acta 132  Q
    ||||    
T  13343377 acta 13343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 10499163 - 10499074
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||  | |||||||||| ||||||||||||   ||| | | ||  ||||||||||||||||||||||||||| ||||||    
T  10499163 tcttagaggtacaccctaattatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacacta 10499074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 10504192 - 10504103
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||  | |||||||||| ||||||||||||   ||| | | ||  ||||||||||||||||||||||||||| ||||||    
T  10504192 tcttagaggtacaccctaattatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacacta 10504103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 18330372 - 18330336
Alignment:
Q  96 tgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18330372 tgtgggacttccacttttttcaattcacacaacacta 18330336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 8077043 - 8077098
Alignment:
Q  28 taattatgcaccttcttagagatacacccccactatataaacactactaatgtgtg 83  Q
    |||||||| ||| | |||||| |||||||||| |||||||| ||||||||||||||    
T  8077043 taattatgtaccctattagaggtacacccccaatatataaatactactaatgtgtg 8077098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 19641346 - 19641421
Alignment:
Q  38 ccttcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccactttttt 115  Q
    |||| ||||||  |||||||| ||||||||||||||||||| |||  ||| | ||||||||| || ||||||||||||    
T  19641346 ccttattagaggcacacccccgctatataaacactactaatatgt--gattcattcgatgtgagatttccactttttt 19641421  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 9010415 - 9010444
Alignment:
Q  51 acacccccactatataaacactactaatgt 80  Q
    ||||||||||||||||||||||||||||||    
T  9010415 acacccccactatataaacactactaatgt 9010444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 40997827 - 40997790
Alignment:
Q  95 atgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  40997827 atgtgggatttccacttttttcgattcacactacacta 40997790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 4e-29; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 21323070 - 21322983
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  21323070 ttagaggtacacccccactatataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 21322983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 32460582 - 32460491
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||||| ||||||    
T  32460582 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacacta 32460491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 13300519 - 13300432
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||| |  |||||||||||||||||||||||||||||||||||||||    
T  13300519 ttagaggtacacccccactatataaacactactaatgtgtg--atccatctgatgtgggacttccacttttttcaattcacactacacta 13300432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 557753 - 557843
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  557753 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccac-tttttcaattcacacaacacta 557843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 12044169 - 12044078
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| ||||||||||||||||||| ||||||    
T  12044169 tcttaaagatacacccccactatataaacactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacacta 12044078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31732612 - 31732698
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  31732612 ttagaggtacacccccactatataaacactactaatgtgt--gatcc-atcgatgtgggacttccatttttttcaattcacactacacta 31732698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 41997708 - 41997790
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||||    
T  41997708 tacacccccaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacacta 41997790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 36941301 - 36941219
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcaca 124  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| |||||||||||||    
T  36941301 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccact-ttttcaattcaca 36941219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 42002499 - 42002581
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||| || ||||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||| ||||||    
T  42002499 tacaccctcaatatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacacta 42002581  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 562525 - 562613
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||  | ||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  562525 tcttagaggtacacccccactatataaacactactaatgtgt--gttccatccgatgtgggacttccac-tttttcaattcacacaacacta 562613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 36936547 - 36936457
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||| ||||||||||||||||||||||||| | ||| ||||||||| ||||||||| | ||||||||||||| ||||||    
T  36936547 tcttagaggtacacccctactatataaacactactaatgtgtgtgttccattcgatgtgagacttccac-tgtttcaattcacacaacacta 36936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 36949777 - 36949835
Alignment:
Q  74 ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  36949777 ctaatgtgtgggatccatccgatgtgggacttccacttttttcaattcacactacacta 36949835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 24435204 - 24435126
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||| ||||| ||||||||||||||||||||||  ||||| ||||| ||| ||||||  ||||||||||||||||||||||||    
T  24435204 tacaaccccattatataaacactactaatgtgt--gatccattcgaagtgagacttc--cttttttcaattcacactacacta 24435126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 3666935 - 3667023
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacactattt 135  Q
    |||||| |||||||||||||||  |||||||||||||  ||   ||| | ||||||||||||||||| |||||||||| |||| |||||||||    
T  3666935 ttagaggtacacccccactata--aacactactaatgcttgt--tccatccgatgtgggacttccacctttttcaatttacacaacactattt 3667023  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 23347925 - 23347857
Alignment:
Q  62 atataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacac 130  Q
    ||||||| ||||  |||||||| ||||| ||   ||||||||||| |||||||||||||||||||||||    
T  23347925 atataaatactatcaatgtgtgtgatccatttagtgtgggacttctacttttttcaattcacactacac 23347857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 8041286 - 8041205
Alignment:
Q  45 agagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||| ||| ||||||||||||||||||||    |||||| ||||| | ||||||||||||||||   |||||||||||||||| ||||    
T  8041286 agaggtacgcccccactatataaacacta----tgtgtgagatccatccgatgtgggacttcca--attttcaattcacactatacta 8041205  T

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Target: scaffold0182 (Bit Score: 64; Significance: 3e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 8919 - 8828
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||| | |||||||||| |||||||||||||||||||||| ||||||    
T  8919 tcttagaggtacacccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacacta 8828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 1e-26; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 34754 - 34667
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||| |||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  34754 ttagaggtacacccccactatataaacactattaatgtgtg--atccatacgatgtgggacttccacttttttcaattcacactacacta 34667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 297 - 426
Target Start/End: Complemental strand, 14177973 - 14177846
Alignment:
Q  297 atgagtcttcttcaacaatccattcttcttctttttgaaaatgtcaacttccttgtggttttgttttgaattttcttaatctcaatcttcccacgtcccg 396  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||  | ||||||||||||||||||||| ||||||||||||||||| ||||| |||     
T  14177973 atgagtcttcttcaacaatccagt--tcttcttttggaaaatgtcacttgccttgtggttttgttttgaatcttcttaatctcaatctttccacgcccca 14177876  T
Q  397 tctcttagaacaaaaccctagcttgctaga 426  Q
    ||||| | || | |||||||||| ||||||    
T  14177875 tctctcaaaatacaaccctagctagctaga 14177846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 40232415 - 40232337
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 129  Q
    ||||||||||||||||||||||||||||  |||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  40232415 tacacccccactatataaacactactaaa-tgtgtgatccatccgatgtgggacttccacttttttcaattcacactaca 40232337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 3095146 - 3095236
Alignment:
Q  41 tcttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||| || |||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||| ||||||||||||||| ||||||    
T  3095146 tcttaaaggtacacccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttccac-tttttcaattcacacaacacta 3095236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 33055849 - 33055929
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||  |||| | |||||||||||||||| ||||||||||||||||| |||||    
T  33055849 tacacctccactatataaacactactaatgtgtg--atccatccgatgtgggacttccatttttttcaattcacactgcacta 33055929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 13894310 - 13894395
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactac 128  Q
    |||||||||| |||| ||||||||||||||| |||||||| |||||| | |||||||| |||| ||||||||||| ||||| ||||    
T  13894310 ttagagatacgcccctactatataaacactattaatgtgtaggatccatccgatgtggaactttcacttttttcatttcactctac 13894395  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 41096982 - 41096897
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||| |||||||||  |||| |  ||||||||||||||| |||||| ||||||||||||||||    
T  41096982 ttagaggtacacccccactatataaacactaataatgtgtg--atccatg-gatgtgggacttccattttttt-aattcacactacacta 41096897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 8273177 - 8273126
Alignment:
Q  56 cccactatataaacactactaatgtgtgggatccgttcgatgtgggacttcc 107  Q
    |||||||||||| ||||||||||||||| | ||| | |||||||||||||||    
T  8273177 cccactatataagcactactaatgtgtgtgctccatccgatgtgggacttcc 8273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 14204546 - 14204512
Alignment:
Q  98 tgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  14204546 tgggacttccacttttttcaattcacacaacacta 14204512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 23254236 - 23254159
Alignment:
Q  50 tacacccccactatataaacacta--ctaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    ||||| ||||||||||||||| ||  |||||||||| ||||  | | || ||||||||||||| ||||||||||||||    
T  23254236 tacacacccactatataaacattatactaatgtgtgtgatctatccaatttgggacttccactcttttcaattcacac 23254159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 6e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 41817846 - 41817930
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 129  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||| | |||||||| ||||||||||||||||||||||||||||    
T  41817846 ttagagatacacccccactatataaacactactaatatgt--gatccatccgatgtggaacttccacttttttcaattcacactaca 41817930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 3992802 - 3992715
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||| ||||||    
T  3992802 ttagaggtacacccccactatataaacactactaatgtgt--gatccatccgatgtgggacttccacctttttcaattcacaccacacta 3992715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 34561468 - 34561555
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||| | ||| ||||||||||||||||||||||||||||||| ||||    
T  34561468 ttagaggtacacccccactatataaatactactaatgtgt--gatccatccgacgtgggacttccacttttttcaattcacactatacta 34561555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 7899973 - 7899900
Alignment:
Q  56 cccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||||||||||||| ||||||    
T  7899973 cccactatataaacactactaatgtgtg--atccatt-gatgtgggacttccacttttttcaattcacaccacacta 7899900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 13521005 - 13520932
Alignment:
Q  59 actatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||||||||||   | | | |||||||| |||||||||||||||||||||||| ||||||    
T  13521005 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacacta 13520932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 31297553 - 31297472
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||||||||||||||||| ||| |||||||| | ||| | |||||| | ||||||||| |||||||||||||| ||||||    
T  31297553 tacacccccactatataaacattacaaatgtgtgtgttccatccgatgtagaacttccact-ttttcaattcacacaacacta 31297472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 39320625 - 39320703
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcac 123  Q
    |||||| ||||||||||||||||||||| ||||||||||||  |||  | | |||| | ||||||||||||||||||||||    
T  39320625 ttagaggtacacccccactatataaacattactaatgtgtg--atctatccaatgtagaacttccacttttttcaattcac 39320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 15541600 - 15541637
Alignment:
Q  95 atgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  15541600 atgtgggacttccactttcttcaattcgcactacacta 15541637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 6e-22; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 51945 - 51858
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| |||||||| |||||||||||||||||||||||||  |||| | ||| ||| ||||||||||||||||||||||||||||||||    
T  51945 ttagaggtacacccctactatataaacactactaatgtgtg--atccatccgacgtgtgacttccacttttttcaattcacactacacta 51858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 46994 - 46919
Alignment:
Q  51 acacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||| ||||||||||||||||||||||      ||| | ||||||||||||||||||||||||||||||||||||||||    
T  46994 acacccctactatataaacactactaatgt------tccatccgatgtgggacttccacttttttcaattcacactacacta 46919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 48987 - 48904
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||    ||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  48987 ttagagatacaccccca----ataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 48904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 149647 - 149730
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||||||||||||||    ||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||    
T  149647 ttagagatacaccccca----ataaacactactaatgtgtg--atccatccgatgtgggacttccacttttttcaattcacactacacta 149730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 51; Significance: 2e-19; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 59469 - 59555
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  59469 ttagaggtacacccccactatataaacattactaatgtgt--gatccatccgatgtgggatttccac-tttttcaattcacactacacta 59555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 63671 - 63757
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||| |||||||||||  ||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  63671 ttagaggtacacccccactatataaacattactaatgtgt--gatccatccgatgtgggatttccac-tttttcaattcacactacacta 63757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 4e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 83974 - 84056
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||||| ||||||||||||||||||||||||||| | ||| ||| |||| |||||| |||| |||||||||||||| ||||||    
T  83974 tacacctccactatataaacactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacacta 84056  T

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Target: scaffold0628 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 3)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 7493 - 7575
Alignment:
Q  43 ttagagatacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacac 125  Q
    |||||| |||| |||||| ||||||||||| ||| |||||| | ||| | ||||||||||||||||||||||| |||||||||    
T  7493 ttagaggtacaaccccacgatataaacacttctattgtgtgtgttccatccgatgtgggacttccacttttttaaattcacac 7575  T

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Target: scaffold0628; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 5747 - 5814
Alignment:
Q  65 taaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||||||||| ||||| | ||| || |||||||||||| || |||||||||||||||| ||||||    
T  5747 taaacactactaaagtgtgtgttccatttgatgtgggactttcatttttttcaattcacacaacacta 5814  T

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Target: scaffold0628; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 515 - 639
Target Start/End: Original strand, 493 - 619
Alignment:
Q  515 aatagactatacatcaactttatgaaggctaacttaaaa-gacgaaaatgccattataattttttctgatttgagaga-gaagggagggtgtaagtgtca 612  Q
    ||||||||||| ||||||||| | ||| | ||||| ||| || |||| | ||| ||||| ||||||||||||||||||  || | ||||| ||||||| |    
T  493 aatagactatatatcaactttctaaagaccaacttgaaatgaagaaactaccactataactttttctgatttgagagacaaatgaagggtataagtgtta 592  T
Q  613 tttcaagttaataatacaatcaatatt 639  Q
    ||| || |||||  |||||||||||||    
T  593 ttttaaattaatggtacaatcaatatt 619  T

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Target: scaffold0484 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 7983 - 8062
Alignment:
Q  50 tacacccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    |||| |||||||||||||| || |||||||||||  |||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  7983 tacatccccactatataaataccactaatgtgtg--atccatccgatgtgggacttccac-tttttcaattctcactacacta 8062  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 213375 - 213319
Alignment:
Q  71 ctactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactaca 129  Q
    |||||||||||||  |||| || |||||| |||||||||||||||||||||||||||||    
T  213375 ctactaatgtgtg--atccatttgatgtgagacttccacttttttcaattcacactaca 213319  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 8622 - 8700
Alignment:
Q  53 acccccactatataaacactactaatgtgtgggatccgttcgatgtgggacttccacttttttcaattcacactacacta 132  Q
    ||||||| |||||||||| ||||| |||||| |||   | | ||||| ||||||||||||||||||||||||| ||||||    
T  8622 acccccattatataaacattacta-tgtgtgtgatttatacaatgtgagacttccacttttttcaattcacacaacacta 8700  T

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