View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_23 (Length: 550)
Name: NF8908_low_23
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 116 - 530
Target Start/End: Original strand, 32364347 - 32364738
Alignment:
| Q |
116 |
cagcaagtaaattatggttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
215 |
Q |
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| T |
32364347 |
cagcaggtaaattttagttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
32364446 |
T |
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| Q |
216 |
acggatttataagctgtttttaacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctac |
315 |
Q |
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| T |
32364447 |
acggatttataaactgtttttaacatatttatacaaatcatttaggacaaattatgaaaatagtgtt------acaggtcacaac-cataatatatcaac |
32364539 |
T |
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| Q |
316 |
cctcaaagagtttcagtagaagaaacatattttaagattgtaaaactaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
415 |
Q |
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| T |
32364540 |
tctcaaagagtttcagtagaaggaacatacattaagattgtaaaactaagtt----------attctaacatgtatttcatatgattttcttgtaaaaag |
32364629 |
T |
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| Q |
416 |
aannnnnnnnnnnnnnnaaatttcctactcacacagacttgtgagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaa |
515 |
Q |
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| T |
32364630 |
aa------atacacacaagatttcctactcacacagacttgtaagcaattaaatagaaaaggtgatgctcactcaataactataatccgcatcctaacaa |
32364723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 236 - 530
Target Start/End: Original strand, 32376147 - 32376439
Alignment:
| Q |
236 |
taacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctaccctcaaagagtttcagtaga |
335 |
Q |
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| T |
32376147 |
taacatatttgtataaatcatgtagggcaaataatgaaaatagtgttacattcacaggtcacaacatttaatatatctaccctcaaagagtttcagtaga |
32376246 |
T |
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| Q |
336 |
agaaacatattttaagattgtaaaac----taagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaagaannnnnnnnnnnnnn |
431 |
Q |
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| T |
32376247 |
aggaacatattttaagattgtaaaactaattaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaagaa------acacacac |
32376340 |
T |
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| Q |
432 |
naaatttcctactcacacagacttgtgagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaaaattgtttacataga |
530 |
Q |
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| T |
32376341 |
aagatttcctactcacacagacttgtaagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaaaatggtttacataga |
32376439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 32375983 - 32376151
Alignment:
| Q |
1 |
gttctggtaaaaatctactgtaattgtatggttctttaagtagtttcatacttaatccatttattattaggttaaatcatttacttgaggcctcctctgc |
100 |
Q |
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| T |
32375983 |
gttctggtaaaaatctactgtaattgtatggttccttaagtagtttcatacttaatccatttattataaggttaaatcatttacttgaggcctcctctgc |
32376082 |
T |
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| Q |
101 |
caagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
169 |
Q |
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| T |
32376083 |
caagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
32376151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32364244 - 32364303
Alignment:
| Q |
1 |
gttctggtaaaaatctactgtaattgtat--ggttctttaagtagtttcatacttaatcc |
58 |
Q |
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| T |
32364244 |
gttctggtaaatatctaccgtaattgtatatggttccataagtagtttcatacttaatcc |
32364303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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