View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_25 (Length: 545)
Name: NF8908_low_25
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 41325537 - 41326056
Alignment:
| Q |
12 |
cagagacaatg-aatgacaaacattggctactatctttgattttatctgccctctcttcggaagtggtcttgatcttgagcatctgaacctgcagttcaa |
110 |
Q |
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| T |
41325537 |
cagagacaatggaatgacaaacattggctactatctttgattttatctgccctctcttcggaagtggtcttgatcttgagcatctgaacctgcagttcaa |
41325636 |
T |
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| Q |
111 |
gtttgcaatttctgaagattcaaaatgatggacagtagtggtattcattttgctaaataaatgaataattgatgcttggtttatacctttagcaggagca |
210 |
Q |
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| T |
41325637 |
gtttgcaatttctgaagattcaaaatgatggacagtagtggtattcattttgctaaataaatgaataattgatgcttggtttatacctttagcaggagca |
41325736 |
T |
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| Q |
211 |
tgaggtctatgagtttatatagatgacttgattaccatacaattggaataccgggtgtaagccctgtgggctaaactgaaagcagatttacaagtaaaca |
310 |
Q |
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| T |
41325737 |
tgaggtctatgagtttatatagatgacttgattaccatacaatttgaataccgggtgtaagccctgtgggctaaactgaaagcagatttacaagtaaaca |
41325836 |
T |
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| Q |
311 |
agtattaattaaaaaagtgattactttaataactaaataatcaccaggttaaatgttcaactttgttgc----atagattagaatgtcaacttaactaag |
406 |
Q |
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| T |
41325837 |
agtattaattaaaaaagtgattactttaataactaaataatcactaggttaaatgttcaactttgttgcatatatagattagaatgtcaacttaactaag |
41325936 |
T |
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| Q |
407 |
acattttttcaatttttatattgaacaataatgtttaatgggacatggtcatggtctttttgattttattttatgtgtaggtatgtatttcatttaccag |
506 |
Q |
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| T |
41325937 |
acattttttcaatttttatattgaacaataatgtttaatgggacatggtcatggtccttttgattttattttatgtgtaggtatgtatttcatttaccag |
41326036 |
T |
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| Q |
507 |
ttgcagtttggtggggctca |
526 |
Q |
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| T |
41326037 |
ttgcagtttggtggggctca |
41326056 |
T |
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