View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_27 (Length: 542)
Name: NF8908_low_27
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 54614752 - 54615278
Alignment:
| Q |
8 |
gtttggtgttggtctgatgtaggttctactttggctgtggatgagaaaagggtgagggatgcaattgcaatggaggataatagttcaatttgtgtggtga |
107 |
Q |
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| T |
54614752 |
gtttggtgttggtctgatgtaggtgctactttggctgtggatgagaaaagggtgagggatgcaattgcaatggaggataatagttcaatttgtgtggtga |
54614851 |
T |
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| Q |
108 |
atgagtttgaggaattgggtttcatggatttgagaagttctgctgctaacagtgtgaggtggagttctagaagtaggttgatgaaagggaagatgcctga |
207 |
Q |
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| T |
54614852 |
atgagtttgaggaattgggtttcatggatttgagaagttctgctgctaacagtgtgaggtggagttctagaagtaggttgatgaaagggaagatgcctga |
54614951 |
T |
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| Q |
208 |
ggaaccttgttaccctaaattggcattgcatggtggacaacttttctcttccatgaatgattgtatctcagtgttctgtggccctgaatgggttttaacg |
307 |
Q |
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| T |
54614952 |
ggaaccttgttaccctaaattggcattgcatggtggacaacttttctcttccatgaatgattgtatctcagtgttctgtggccctgaatgggttttaacg |
54615051 |
T |
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| Q |
308 |
tctaggttaagacgaagctatggtgggtcaatatgtgatttttccattggaggggataggctttttgcacttcatagtgaagagaatgtttttgatatat |
407 |
Q |
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| T |
54615052 |
tctaggttaagacgaagctatggtgggtcaatatgtgatttttccattggaggggataggctttttgcacttcatagtgaagagaatgtttttgatatat |
54615151 |
T |
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| Q |
408 |
gggagactcctacaccaccaattatatagagtttaagtttaatttttccttagtttgtcataaccataaccagattgcttctgcaattttcatttttcaa |
507 |
Q |
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| T |
54615152 |
gggagactcctacaccaccaattatat--agtttaagtttaatttttccttagtttgt------cataaccagattgcttctgcaattttcatttttcaa |
54615243 |
T |
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| Q |
508 |
gatagtgctgagagtaagacattgtatatacgaga |
542 |
Q |
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| T |
54615244 |
gatagtgctgagagtaagacattgtatatacgaga |
54615278 |
T |
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