View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8908_low_29 (Length: 527)
Name: NF8908_low_29
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_29 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 7726979 - 7727467
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
7726979 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcga |
7727078 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727079 |
aagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7727178 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcattt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7727179 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccggttactttgggcattt |
7727278 |
T |
|
| Q |
317 |
cagccaatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaagaccccagccacggcttatggtgacaacggtgactcg |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
7727279 |
cagccaatgagaggaagttaagatatgggaggtcgccaaactctgctggaagcgtaccagaaagaccccagccacggctgatggtgacgacggtgattcg |
7727378 |
T |
|
| Q |
417 |
gccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggc |
505 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7727379 |
gccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcccaatcggagaggcggccgttggggc |
7727467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 7731139 - 7731627
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7731139 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcga |
7731238 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731239 |
aagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7731338 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7731339 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctaaaagagttagggattggcccagttactttcggcattt |
7731438 |
T |
|
| Q |
317 |
cagccaatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaagaccccagccacggcttatggtgacaacggtgactcg |
416 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
7731439 |
cggctaatgagaggaagttaagataagggaggtcgccaaactctactggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcg |
7731538 |
T |
|
| Q |
417 |
gccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggc |
505 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
7731539 |
gccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggc |
7731627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 7739297 - 7739785
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
7739297 |
cacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactggga |
7739396 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
||| ||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7739397 |
aagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtg |
7739496 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcattt |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
7739497 |
gggatcgacccactaagactgttggaaccaaggtcgagtttttgtagtctttggagtttgctgaaagagttaggaattggcccagttactttgggcattt |
7739596 |
T |
|
| Q |
317 |
cagccaatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaagaccccagccacggcttatggtgacaacggtgactcg |
416 |
Q |
| |
|
| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
7739597 |
cggccaatgagaggaagttaagatatggaaggtcgccaaactccgctggtagcgtaccggaaagaccccagccacggctgatggtgacgacggtgattcg |
7739696 |
T |
|
| Q |
417 |
gccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggggc |
505 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
7739697 |
gccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggc |
7739785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 7699117 - 7699600
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| |||||||||||||| |||||| | |||| |||||| |||| |||| ||| || |||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
7699117 |
cacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcga |
7699216 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
||| || ||| | ||||| ||||| |||||| |||||||||| ||||||||| ||||||| ||||| || || |||||||| ||||||||| | | |
|
|
| T |
7699217 |
aagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggag |
7699316 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcattt |
316 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7699317 |
gggattggcccactaaggctgttggaaccaaggtctagattttgtagtctttggagtttgctaaaagagttagggattggcccagttactttcggcattt |
7699416 |
T |
|
| Q |
317 |
cagccaatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaagaccccagccacggcttatggtgacaacggtgactcg |
416 |
Q |
| |
|
| ||||||||||| | | ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
7699417 |
cggccaatgagagcatgctaagataagggaggttgccaaactccgctggaagcgtaccggaaagaccccagccacggctgatggtgacgacggtgactcg |
7699516 |
T |
|
| Q |
417 |
gccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcggagaggcggccgttggg |
503 |
Q |
| |
|
|||||| |||| ||||||| ||||| ||||||||||| |||||| || || |||||||||||||| ||||||||| ||||| |
|
|
| T |
7699517 |
gccaggataaggtctgccgcaaccgacgaagctccagtc---acaacattcggtgttgttgtcccagtcgtcgaggcggcctttggg |
7699600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 7713462 - 7713928
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
7713462 |
cacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcga |
7713561 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
||| ||| ||| | | ||| |||||| |||||| |||||||||||| |||||| || ||||||| ||| || | || |||||||| ||| ||||| |
|
|
| T |
7713562 |
aagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattca |
7713661 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagttactttgggcattt |
316 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7713662 |
gggattggcccactaaggctgttggagccaaggtcgagattttctagtcttttgagtttgctgaaagagttagggattggcccagttactttcggcattt |
7713761 |
T |
|
| Q |
317 |
cagccaatgagaggaagttaagataagggaggtcgccaaactctgctggaagcgtacccgaaagaccccagccacggcttatggtgacaacggtgactcg |
416 |
Q |
| |
|
| ||||||||||| | | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7713762 |
cggccaatgagagcatgctaagataagggaggtcgccaaactccgctggaagtgtaccggaaagaccccagccacggccgatggtgacgccggtgactcg |
7713861 |
T |
|
| Q |
417 |
gccaggtgcaggtttgccgcacccgacaaagctccagtcgctacaacagtctgtactgttgtcccagtcg |
486 |
Q |
| |
|
|||||| |||| ||||||| || || ||| ||||||| |||||| || || |||||||||||||| |
|
|
| T |
7713862 |
gccaggataaggtctgccgcaacctacgaagttccagtc---acaacattcagtgttgttgtcccagtcg |
7713928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 12908357 - 12908070
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactcttcgcaaacttgttcagtccagtagggatcgcaccacacagctggttaaagctgacgttaaactgcga |
116 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||| | ||||| |||| |||||||| |||||||||||||| |||||| |||| || || ||||| || |
|
|
| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
117 |
aagggacggtatggagccgaacgacgcgggaataacaccggataactggttgttagataaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
216 |
Q |
| |
|
|| ||||||| || | ||| |||||| ||||||||||||||||||| ||||||||| ||||||| ||| | ||||| ||||||| ||||||| || ||| |
|
|
| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
217 |
gggatcggcccactaagactgttggaaccaaggtcaagtttttgtagtcttttgagtttgctgaaagagttagggattggtccagtta |
304 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| | || || | | | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12908157 |
gggatcgggccactaaggttgttggagttaagtttgaggcttcgcaattttttgagtttgctgaaagagttagggattggcccagtta |
12908070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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