View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_30 (Length: 524)
Name: NF8908_low_30
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 282 - 524
Target Start/End: Complemental strand, 42092154 - 42091912
Alignment:
| Q |
282 |
aaagagagaacagtagaaaattaccgttgagtaaagtgaagatcaaaaggagatttgaatgaggaagtgacaagaggctgtgaagaaatagaaggcaaag |
381 |
Q |
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| T |
42092154 |
aaagagagaagagtagaaaattaccgttcagtaaagtgaagatcaaaaggagatttgaatgaggaagtgacaagaggctgtgaagaaatagaagacaaag |
42092055 |
T |
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| Q |
382 |
cagagaaagatccactgccattactagttggtgtgggaagttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtccttttg |
481 |
Q |
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| T |
42092054 |
cagagaaagatccaccgccattactagttggtgtgggaagttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttttg |
42091955 |
T |
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| Q |
482 |
tccagccaccacatccctcgcacaccgccactttttaccgtct |
524 |
Q |
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| T |
42091954 |
tccagccaccacatccctcgcacaccgccactttttaccgtct |
42091912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 42092290 - 42092162
Alignment:
| Q |
44 |
atgacaagtacttcttagaaatttaatctttactaaactcattaactactagaaaatcatccacttgattaaaacaaagctactagtagcagtattttat |
143 |
Q |
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| T |
42092290 |
atgagaagtacttcttagaaatataatctttactaaactcattaactactagaaaatcatccacttgattaaaacaaagctactagtagcagtattttat |
42092191 |
T |
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| Q |
144 |
ttcgttacaagtcaaaaataaaatgatta |
172 |
Q |
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| T |
42092190 |
ttcgttacaagtcaaaaataaaatgatta |
42092162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 7246546 - 7246605
Alignment:
| Q |
420 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtccttt |
479 |
Q |
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| T |
7246546 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtacttt |
7246605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 18199801 - 18199853
Alignment:
| Q |
422 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagt |
474 |
Q |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagt |
18199853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 52052075 - 52052018
Alignment:
| Q |
422 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtccttt |
479 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
52052018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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