View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_33 (Length: 512)
Name: NF8908_low_33
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 25 - 501
Target Start/End: Original strand, 41324058 - 41324534
Alignment:
| Q |
25 |
cctcaaggtagcgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacacaaattcaaaaatgtg |
124 |
Q |
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| T |
41324058 |
cctcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacacacaaattcaaaaatgtg |
41324157 |
T |
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| Q |
125 |
gtcaatcaaaactgcgttcaaatgtgattattttgcattaggcctcgcgtaacatttttcaattcgtttgattttttacctgtagaatgccacaccatct |
224 |
Q |
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| T |
41324158 |
gtcaatcaaaactgcgttcaaatgtgattattttgcattaggcctcgcgtaacatttttcaattcgtttgattttttacctgtagaatgccacaccatct |
41324257 |
T |
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| Q |
225 |
aataaatttcatgtcgactccatatgagagcttatcctctagtgcatgagagtatccacctgtattatgttacataattaaatttatcaatgaatttagg |
324 |
Q |
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| T |
41324258 |
aataaatttcatgtcgactccatatgagagcttatcctctagtgcatgagagtatccacctgtattatgttacataattaaatttatcaatgaatttagg |
41324357 |
T |
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| Q |
325 |
tagtattaatcttgttatttatgcaactcnnnnnnngcttgaaatttggaagtgatttctacttagtatatctagaaggatgcttnnnnnnntgtatata |
424 |
Q |
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| T |
41324358 |
tagtattaatcttgttatttatgcaactctttttttgcttgaaatttggaagtgatttctacttagtatatctagaaggatgcttaaaaaaatgtatata |
41324457 |
T |
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| Q |
425 |
tagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
501 |
Q |
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| T |
41324458 |
tagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
41324534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 41309452 - 41309534
Alignment:
| Q |
26 |
ctcaaggtagcgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgcacaca |
108 |
Q |
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| T |
41309452 |
ctcaaggtagtgggtctaagcttggtggtaaatgtctctattagagccacaatacaatatacaagggctattctctgcacaca |
41309534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 501
Target Start/End: Original strand, 41309754 - 41309836
Alignment:
| Q |
419 |
tatatatagtgagtttgaggagttttgtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
501 |
Q |
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| T |
41309754 |
tatatttagtgagtttgaagagttttgtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatct |
41309836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 41309612 - 41309659
Alignment:
| Q |
202 |
acctgtagaatgccacaccatctaataaatttcatgtcgactccatat |
249 |
Q |
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| T |
41309612 |
acctggagaatgccacaccatctgataaatttcatgttaactccatat |
41309659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 27657558 - 27657492
Alignment:
| Q |
38 |
ggtctaagcttggtggtaaatgtctctattagagccacaatacaatatactagtgctattctctgca |
104 |
Q |
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| T |
27657558 |
ggtctaagcttagtggtaaatgtctctattagagctacaatgcaatatacaagagctatcctctgca |
27657492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 27657379 - 27657326
Alignment:
| Q |
201 |
tacctgtagaatgccacaccatctaataaatttcatgtcgactccatatgagag |
254 |
Q |
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| T |
27657379 |
tacctgaagaatgccacaccatctgataaatttcatgtcaactccatatgagag |
27657326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 501
Target Start/End: Complemental strand, 27656779 - 27656723
Alignment:
| Q |
445 |
gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatct |
501 |
Q |
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| T |
27656779 |
gtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatct |
27656723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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