View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_35 (Length: 505)
Name: NF8908_low_35
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 44137966 - 44138445
Alignment:
| Q |
20 |
gaaggctatgtatccactgcataaaatagatatgctagttgacgacacgtcaagttgcaaggcactcaacttcgtcgatgcatatttatgatacaactag |
119 |
Q |
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| T |
44137966 |
gaaggctatgtatccactgcataaaatagatatgctagttgacgacacgtcaagttgcaaggcactcaacttcgtcgatgcatatttatgatacaactag |
44138065 |
T |
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| Q |
120 |
atcctaattgatcaagttaaagaacacatggccaacataacaaaggttgatggagaatgtcttcggaaagcacattagggacaacaacatgatctatgca |
219 |
Q |
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| T |
44138066 |
atcctaattgatcaagttaaagaacacatggccaacataacaaaggttgatggacaatgtcttcggaaagcacattagggacaacaacatgatctatgca |
44138165 |
T |
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| Q |
220 |
tgaaaacatttgtactgaaggcttcaagacaaa-caacattgtttgtttttcttccctaagaacttcattccataggaaaaataagatgtcaatatccaa |
318 |
Q |
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| T |
44138166 |
tgaaaacatttgtactgcaggcttcaagacaaaacaacattgttt----ttcttccctaagaacttcattccataggaaaaataagatgtcaatatccaa |
44138261 |
T |
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| Q |
319 |
agtgtaagtcggcctg-----------aatgtatgtataacatttgagacatgact---------------------tcacaatcagagactttgcccta |
386 |
Q |
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| T |
44138262 |
agtgtaagtcggcctgaatgtatgtataatgtatgtacaacatttgagacatgactcttgcactaatggcttggatttcacaatcagagactttgcccta |
44138361 |
T |
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| Q |
387 |
gatgatcccatcgctttgttgttaaaatggaggaacttactccctcaactcaaaggatcacttgcatgactctaatatcttgga |
470 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44138362 |
gatgatcccatcactttgttgttaaaatggaggaacttactccctcaactcaaaggatcacttgcatgactctaatatcttgga |
44138445 |
T |
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